Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00113 ATGAACATGGCCTCTTCTGATAGAGGAGCTTCTGATGATCAAATTTCACAACTTCCAAGTTGGAGACATAAAGAAGCCCGTGCCAAGTTGGAGCTTGGCAATGACTCTGAAGGCAGTGAAAAATTTATCAATGAAGACTCAATATGTTATGTTCTGATTCGCTTAGAGGAATGTTGTATCTGCTTAGCCAAGTACAAAGACAAAGAGGAAGTTAGACAATTTCCCTGTTCCCATATGTTCCACGTAAAATGTGTGGATCAATGGCTAAAAATGACATCTTGTTGCCCTATTTGCGAACAAGGATTACAGAGTTTAAACAAACTGATCATTACTTATGCAGAGTTAGATGATGCCACACGGATAGCAGCAGCATCTGCAGATGCGACAGTGATTATAGTGGGACAACAACAACTTCTATTGAGTGAAGTAGCTAATGCTTCCAAAGGACCTGAGATTCTTGTCATAATGTCTGGTGGGGGCATGGATGCGTCTTTTGCTAAATTTAATGATAAAATCACAATCATCGTATGGGTTGGCTACCCCGGTGAAGCTGTTTGTGGGAATTTTTATTTTTGA 576 0.401 MNMASSDRGASDDQISQLPSWRHKEARAKLELGNDSEGSEKFINEDSICYVLIRLEECCICLAKYKDKEEVRQFPCSHMFHVKCVDQWLKMTSCCPICEQGLQSLNKLIITYAELDDATRIAAASADATVIIVGQQQLLLSEVANASKGPEILVIMSGGGMDASFAKFNDKITIIVWVGYPGEAVCGNFYF 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00113 191 ProSiteProfiles Zinc finger RING-type profile. 58 99 IPR001841 -
Pumo6g00113 191 SUPERFAMILY RING/U-box 57 103 - -
Pumo6g00113 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 104 IPR013083 -
Pumo6g00113 191 SMART ring_2 58 98 IPR001841 -
Pumo6g00113 191 Gene3D - 106 187 IPR036881 GO:0004553|GO:0005975
Pumo6g00113 191 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 101 - -
Pumo6g00113 191 Pfam Ring finger domain 57 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00113 Pumo-Chr6 1264503 1266425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00113 1 102 C3H Transcription Factor Family AT4G26580 53.922 3.98e-32 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00113 - - gmx:100813670 172.94