Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00111 ATGGGTCTTGGTTTGAAGATGAAGAGCCTGAGGCACCACGCCATGGCTTTGAAGTTACATGAGCAAGCGGGGAGCAAAAGAAAGTACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGTTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGCTGCTTCATCTATAGTAAAATGGATGCTGACACTAAAGTCAGAAGGAAAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACCCCTTCTGCCATTGACCAGGAAACCTTTGCAGAGTATACAGCCAGGACAGCATTTGAACGGCCATTACTCAGTGGGGTGGCCTATGCTCAAAGAGTAGTTAACTCCGAGAGGGAAACATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACTGGTTAGAGATGAGTATGCACCAGTGATATTTGCGCAAGAAACTCTCTCTTACCTTGAATCTCTTGATATGATGTCTGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGTCCTTTTAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTATAAATCTAAGCTCCCTCCAGAGCCAACAATGGAAGAGCGCATTAAAGCAACTGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGATATCACAAACTCTACTGACCCCTTAATCATGTATGGCAACCAAAATGAAGAAGGTGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATACAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCACTTACCACGGCATTCTTATTCTTTGTGATTCTTTTATTAGTGGGTTATATTTTATATGGTGCTGGAAATCACATTGTCAAAGTAGAGGATGATTTTCATGAAATGCAGGAATTAAAAGTTCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGCTCTGCTTCTGAAGACAGAATTGAGTTCAACTCAACGAGATTATGCCCAGACTGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAGGTACTTGACCGGGCTAAAATTGAAGCTGGCAAGTTAGAGCTGGAAGCAGTTCCATTTGACATTCGTTCCATACTTGATGATGTCCTTTCTCTTTTTTCTGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGAGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTGAAAGTCCATCTAGCTGAAAATAGAATGTCCAAAATGAATGGGAAAATTGAGACTTTTCTAAATGGAGGATCAGATGAAGTTAAGCATGTGTCTGGTGGTTATAATTTCAAAACTTTAAGTGGATATGAAGCAGCTGATGAGCGGAACAGCTGGGACAATTTTAAGCATCTAATTGCCGATGAAGAATTTTTCTTTGATGCTTCTGTTAAAAAGGCGGCCAGTGAATCTTATGAGCAAATCACCTTGATGGTCAGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGACATTATGGTGGTACTGGCATTGGCTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTGAGATAAGTTTCATAAGCCAACCGCAGGTTGGGAGCACATTTTCATTTACTGCAGATTTTGGAACGATTAAGAAAAATGCAATTACTGACATGAAGAAACATAATTTGGAAGATCTGCCTTCCAATTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTGACTAGATACCATCTGAAGAGATTAGGGATACAAGCTAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCAGGATTATTTCAGCCCGATTTTATTTTTGTTGAGAAAGATTCATGCGTTTGTGGAGAGGATGGGATCTTCAATGTGTGGCAACTGGACTGGAAACAGAATGGGCATATGTTTAAGATACCTCAAATGATCCTTCTTGCGACGAACATTAGTAATGCTGAATTTGATAAAGCTAAAGCCGCAGGTTTCAGCGATACTGTGATCATGAAGCCTCTAAGAGCTAGCATGGTGGCTGCTTGTCTTCAGCAAGTTCTGGGAACGGGGAAGAAGAGGCAGCATGGGAAAGACGTGAAGCCTAATGGTTCCAGTTTTGTAAAAAGCCTTCTTTGTGGGAAAAAAATCTTAGTGGTTGATGACAATGTGGTAAACCAGAGGGTCGCTGCAGGTGCATTAAAAAATTTTGGAGCTGATGTGACGTGTGCAAACAGTGGCAAAACTGCTCTTGAAATGCTGCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACGCGGCGAATTCGGATGATGGAGACAGAGGCAAATGAGCAGCAGATGAATGGTGAAGGAAATGGGTGGAAAAACAAGTACCATATACCAATATTGGCCATGACAGCTGATGTAATTCATGCAACATACGATGAGTGTGTGAAATGTGGGATGGATGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAGGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCTCGGACAACTCATTACAAAATGGCAGAACTTAA 3033 0.4197 MGLGLKMKSLRHHAMALKLHEQAGSKRKYTFIQAHRAWLPKFLMLWILLMALIGCFIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERETFEKQHGWVIKTMEREPSLVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPEPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNSTDPLIMYGNQNEEGDMSLVHESKLDFGDPYRKHTMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLKTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRMSKMNGKIETFLNGGSDEVKHVSGGYNFKTLSGYEAADERNSWDNFKHLIADEEFFFDASVKKAASESYEQITLMVSVEDTGIGIPFSAQDRIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISQPQVGSTFSFTADFGTIKKNAITDMKKHNLEDLPSNFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNGSLTSGLFQPDFIFVEKDSCVCGEDGIFNVWQLDWKQNGHMFKIPQMILLATNISNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQHGKDVKPNGSSFVKSLLCGKKILVVDDNVVNQRVAAGALKNFGADVTCANSGKTALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRMMETEANEQQMNGEGNGWKNKYHIPILAMTADVIHATYDECVKCGMDGYVSKPFEEENLYQAVAKFFNPKPTSDNSLQNGRT 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00111 1010 SMART REC_2 861 991 IPR001789 GO:0000160
Pumo6g00111 1010 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Pumo6g00111 1010 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Pumo6g00111 1010 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Pumo6g00111 1010 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Pumo6g00111 1010 FunFam Histidine kinase 4 114 329 - -
Pumo6g00111 1010 Gene3D CHASE domain 114 329 IPR042240 -
Pumo6g00111 1010 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 677 IPR003594 -
Pumo6g00111 1010 CDD HATPase_EvgS-ArcB-TorS-like 500 677 - -
Pumo6g00111 1010 PANTHER TWO-COMPONENT HISTIDINE KINASE 27 992 - -
Pumo6g00111 1010 Gene3D - 357 446 - -
Pumo6g00111 1010 ProSiteProfiles Histidine kinase domain profile. 390 679 IPR005467 -
Pumo6g00111 1010 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155|GO:0007165
Pumo6g00111 1010 ProSiteProfiles Response regulatory domain profile. 704 834 IPR001789 GO:0000160
Pumo6g00111 1010 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 674 IPR036890 -
Pumo6g00111 1010 FunFam Histidine kinase 4 355 446 - -
Pumo6g00111 1010 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Pumo6g00111 1010 ProSiteProfiles Response regulatory domain profile. 862 995 IPR001789 GO:0000160
Pumo6g00111 1010 SUPERFAMILY CheY-like 860 996 IPR011006 -
Pumo6g00111 1010 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Pumo6g00111 1010 Gene3D - 856 1001 - -
Pumo6g00111 1010 Gene3D - 697 839 - -
Pumo6g00111 1010 Coils Coil 433 453 - -
Pumo6g00111 1010 SMART CHASE_2 110 295 IPR006189 -
Pumo6g00111 1010 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Pumo6g00111 1010 SUPERFAMILY CheY-like 699 835 IPR011006 -
Pumo6g00111 1010 Pfam Response regulator receiver domain 863 991 IPR001789 GO:0000160
Pumo6g00111 1010 Gene3D - 61 113 - -
Pumo6g00111 1010 Gene3D - 447 682 IPR036890 -
Pumo6g00111 1010 CDD REC_hyHK_CKI1_RcsC-like 863 991 - -
Pumo6g00111 1010 SMART HKATPase_4 495 679 IPR003594 -
Pumo6g00111 1010 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Pumo6g00111 1010 Pfam CHASE domain 113 293 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00111 Pumo-Chr6 1245702 1251825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00111 13 1004 Histidine Kinase Gene Family AT2G01830 70.833 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo6g00111 HATPase_c 7.4e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00111 K14489 - gmx:100789894 1909.42