Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00107 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCAAAGGTGTGGTGTTATTACTGCGATCGCGAATTCGACGACGAGAAGATCTTGGTGCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGCCACAAGAAGCTCTCCACCGCTGGCGGCATGGCCATTCACGTCCTCCAGGTCCACAAGGAATCCGTCACCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCACCAGATATCTTAGCTGCTCATTATGGTGAAGAAGAGGATGACGTTCCATCAAAGGCAGCCAAGGTTGATATTCCACCAACTCAGCTTGTAGGTGGAATGATTCCACCTCCTTTGGGCACAGGATATCCTCCACGATCAACCTTGCCCACAATTCCACCAGTTTATAATCCAGCTGTACCTGTGCCTCCAAATGCTTGGGTGGTTCCACCTCGACCTCAGCCATGGTTTTCACAGCCTCCAGCTGTTTCAGTTCCTCCTGCTGCCCCATACACACAACAGCCATTATTTCCTGTGCAGAACGTGAGGCCTCCACTGCCAGCAACTGCTCCTGCACTCCAAACTCAGATTACTCCTCCTGGATTGCCTCCATCTGCACCTGTCCCAGTTTCACAACCTTTATTTCCTGTTGTTGGAAATAACCATACTACGACTCAAAGTTCAACATTTTCTGCTCCACCTCTGCCCTCAAGTGTTCCATCAGTTACTCCAGTGATGTCTACAAATGTCCCTGTTGATACACATTTGACTACCAACTCTTCGGTAACAAGTAGTTATCAGGCTATAGGGGTTCCAGGTGGAGCAGCAGGTAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGGCCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTTCCCAGCCAGCCACCAATGAAGTCTACTTAGTTTGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGAATGTCTTTGCCAAAATATCAGGTGCATGATGAAAGTAGCCAGGTAAGTCATACTACCTCTGTAATAGATGGAGTTGCTTTCACATCTAACCAGATGAGTAGGCTTTTTATGCTTCCTGTTTTCAGATTCAGTTGTTTACACGTTGTTTCCTATTTAAAGAGGTACATTCTGTATAAATTTCTAATTCTTTTTAAAAATAAAATAAATTACAAAGAAAATATGATCCTTTTAATCCTCCCTCTTGTTTCCAACCTAAATGGGTAG 1266 0.4526 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDILAAHYGEEEDDVPSKAAKVDIPPTQLVGGMIPPPLGTGYPPRSTLPTIPPVYNPAVPVPPNAWVVPPRPQPWFSQPPAVSVPPAAPYTQQPLFPVQNVRPPLPATAPALQTQITPPGLPPSAPVPVSQPLFPVVGNNHTTTQSSTFSAPPLPSSVPSVTPVMSTNVPVDTHLTTNSSVTSSYQAIGVPGGAAGNSHSYASGPNTGGPSIGPPPVIANKAPASQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQVSHTTSVIDGVAFTSNQMSRLFMLPVFRFSCLHVVSYLKRYILYKFLILFKNKINYKENMILLILPLVSNLNG 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00107 421 Gene3D Classic Zinc Finger 1 66 - -
Pumo6g00107 421 SMART c2h2final6 12 35 IPR013087 -
Pumo6g00107 421 SMART c2h2final6 36 59 IPR013087 -
Pumo6g00107 421 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Pumo6g00107 421 PANTHER ZINC FINGER PROTEIN 207 1 354 - -
Pumo6g00107 421 CDD SUF4-like 13 92 - -
Pumo6g00107 421 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Pumo6g00107 421 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Pumo6g00107 421 MobiDBLite consensus disorder prediction 283 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00107 Pumo-Chr6 1194950 1198868 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00107 1 371 C2H2 Transcription Factor Family AT1G30970 61.757 1.97e-142 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g00107 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00107 - - gsj:114413692 657.907