Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00106 ATGCCTGTCACAAACACAACAACACCAACAGTGGCAGAACATATCAAATGGAGAAGACCCAGAAACCAATTCAACCACCACCACCACCACCCCCCCATTTCAGAAACAGATCAAAACCCTCAAATCCCTTCCATAATCCAATCCACTAGGTGCAAGTCCACCATTTCCTCCCTGCTCCTCTCCACTTTCTCCAACAACACCTCCTCCAATAATGACACCCCCACCTCCATCAATGCCACTGCCCATAGCAAGAAAAAAAACAACTTTTCTGCATCAACCTTCAGAGGGTTGGGCTGCACCGCCGGCGCGTCGCAGCAGGTATCGGTGCCGGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAAAAGAAGCACAAGAGAACCAACAGCAGCAGCAAGAACAAGGCTTTCCATGGTGGGGTTCTAGAAGGTTCCAATCCTGGCTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTTCTCAACAGATGCTGCTGCCTCTGTTGATTGTGTTGTGGCCAGGAAGAATGTCTCTGCAAGAGGCAAAATTGATGTGGATAAGATCAGTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAGACCTTCACTTTTCTGGACACTGATCCTAACATTTTCACACCACGCTCTGCCTCTGACACTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCCTCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACATGATCAATTCAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTAGAACTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAGACTAGGCTTCAATTTTGGGATGATACATCGAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGGTTGCACAAAAAAATTTCTGCCCAGTATGCAGGAGTTACTTCAAGGAACGCTCAAATTCATGCATTAAGGAGTTTGAGAGAAGACGAGAGAGTGGGAGGAATGCGCCGTTGATGGCAATGAGAGTAATAGAGGTGATGTGCCGAGCCATCTTCCTCCTCGGTCGCCACCACTTCGCCGACGTTGACATGCAGCAGCCACACCTCCCAGATCTACCATCCTTCAGAGTATTGCGACGTCGAACATGTGGGGTGAGTCGTGACTGA 1335 0.4734 MPVTNTTTPTVAEHIKWRRPRNQFNHHHHHPPISETDQNPQIPSIIQSTRCKSTISSLLLSTFSNNTSSNNDTPTSINATAHSKKKNNFSASTFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTNSSSKNKAFHGGVLEGSNPGCVDFQDVWCGPGIGFSTDAAASVDCVVARKNVSARGKIDVDKISHRERSSYVGRRTETFTFLDTDPNIFTPRSASDTYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKTRLQFWDDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVAQKNFCPVCRSYFKERSNSCIKEFERRRESGRNAPLMAMRVIEVMCRAIFLLGRHHFADVDMQQPHLPDLPSFRVLRRRTCGVSRD 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00106 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 374 IPR013083 -
Pumo6g00106 444 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 55 369 IPR045191 GO:0061630
Pumo6g00106 444 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Pumo6g00106 444 SUPERFAMILY RING/U-box 326 374 - -
Pumo6g00106 444 SMART ring_2 327 367 IPR001841 -
Pumo6g00106 444 Pfam Ring finger domain 325 368 IPR001841 -
Pumo6g00106 444 MobiDBLite consensus disorder prediction 121 136 - -
Pumo6g00106 444 MobiDBLite consensus disorder prediction 114 143 - -
Pumo6g00106 444 MobiDBLite consensus disorder prediction 1 40 - -
Pumo6g00106 444 FunFam E3 ubiquitin-protein ligase rnf12-A 294 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00106 Pumo-Chr6 1184280 1189876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00106 11 282 C3H Transcription Factor Family AT1G73760 43.003 3.06e-57 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00106 - - gmx:100819907 661.373