Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00085 ATGTCTGTTTTGTTTGAAATGGTAGATATTGAGGAGGACATCCGTTCTTTACAGCTCGAATCAGCAGAAGACAATAATGGGGTGGTAAATCCAGAGGATGGAAAGCCGGAAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCACAAGCCGTTGAGGCTGAGCCAAAAGTGAAAGATAAGGATATTCCTTCTGTTCAAGAAGAAGAAGAAGAACAAGAGATGACAAAAAGACACTTGAATGTTGTCTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATACGAGAAAGAGGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACTGAGACAACAAGGTTTACTATTTTGGATGCACCTGGTCACAAAAGCTATGTTCCTAACATGATTAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTTATTTCTGCTCGGAAGGGAGAGTTTGAAACGGGATACGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGGCTAAGCTGCTTGTTGTTGTCAATAAAATGGATGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGGTTCCATTTCTAAAGCAATCTGGATACAACGTAAAGAAAGATGTATTGTTTTTACCAATATCTGGTCTAATGGGTACAAACATAAAAACAAGAGTGGATAAAAGCGTTTGTCCATGGTGGAACGGGCCTTGCTTATTCGAGGCCCTTGATGCCATTGAAGTTCCACTACGAGATCCCAACGGTCCCTTCAGGATGCCTATTATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTGTTCGTGAGGGAGATTCCTTGTTGGTCATGCCAAATAAGGATCAAGTAAAAGTTGTTGCTATATTTATTGATGAGGATCGTGTTAAACGTGCTGGACCTGGTGAAAATTTAAGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATCATCTGGGTTTGTCCTGTCCAGTGTTGCTAATCCAATACCAGCAGTTACTGAATTTGTTGCCCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCACATCCACTCTGTGGTTGAGGAATGTGAAATTGTTGAACTTATACAGCAAATTGATACAAAGACAAAGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTGAAGAATGGCGCTGTTGTAGTGTGCCGTGTTCAGGTCAATAATTCTATTTGCATTGAGAAGTTCTCTGATTTTCCACAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTCACTGGTCTGTGA 1530 0.4137 MSVLFEMVDIEEDIRSLQLESAEDNNGVVNPEDGKPEEVEKSDKMDEDPKQEVQAQAVEAEPKVKDKDIPSVQEEEEEQEMTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEIESKMVPFLKQSGYNVKKDVLFLPISGLMGTNIKTRVDKSVCPWWNGPCLFEALDAIEVPLRDPNGPFRMPIIDKFKDMGTVVMGKVESGTVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDISSGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELIQQIDTKTKKPLKKKVLFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00085 509 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 63 307 - -
Pumo6g00085 509 PANTHER TRANSLATION FACTOR 76 507 - -
Pumo6g00085 509 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 311 397 - -
Pumo6g00085 509 Gene3D Translation factors 399 509 - -
Pumo6g00085 509 Gene3D Translation factors 312 397 - -
Pumo6g00085 509 Gene3D - 64 307 IPR027417 -
Pumo6g00085 509 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Pumo6g00085 509 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Pumo6g00085 509 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Pumo6g00085 509 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Pumo6g00085 509 CDD eRF3_C_III 401 509 - -
Pumo6g00085 509 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 309 IPR000795 GO:0003924|GO:0005525
Pumo6g00085 509 PRINTS Yeast eukaryotic release factor signature 74 90 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Pumo6g00085 509 PRINTS Yeast eukaryotic release factor signature 189 196 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Pumo6g00085 509 PRINTS Yeast eukaryotic release factor signature 224 231 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Pumo6g00085 509 PRINTS Yeast eukaryotic release factor signature 310 321 IPR003285 GO:0000288|GO:0003747|GO:0005525|GO:0006415
Pumo6g00085 509 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 403 508 IPR009001 -
Pumo6g00085 509 Pfam Elongation factor Tu domain 2 327 393 IPR004161 GO:0005525
Pumo6g00085 509 MobiDBLite consensus disorder prediction 16 82 - -
Pumo6g00085 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 318 IPR027417 -
Pumo6g00085 509 CDD eRF3_II 314 395 - -
Pumo6g00085 509 Pfam Elongation factor Tu GTP binding domain 83 288 IPR000795 GO:0003924|GO:0005525
Pumo6g00085 509 SUPERFAMILY Translation proteins 306 399 IPR009000 -
Pumo6g00085 509 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Pumo6g00085 509 Pfam Elongation factor Tu C-terminal domain 400 508 IPR004160 -
Pumo6g00085 509 FunFam Putative translation elongation/initiation factor family protein 401 509 - -
Pumo6g00085 509 CDD EF1_alpha 87 307 - -
Pumo6g00085 509 MobiDBLite consensus disorder prediction 30 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00085 Pumo-Chr6 954008 962940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00085 83 504 Eukaryotic Initiation Factors Gene Family AT5G60390 37.647 3.45e-97 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00085 K03267 - gmx:100784412 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00085 6 954008 962940 Pumo6g00085 6 954008 962940 ECH