LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g00074	ATGGGTGGTGGAGGAACACTCGTGGAAGGGATTCGACGCTTGTTTCAACGACGCGCTTCTGCTTCTTCTTCTGACGACCACAATCACAACAATGCCAATAATAGCCGCGTCTCACTGAGAGATTTGCGCGCGCAATTGGCTTCCATTCCCAATCAGGACATCCCCGATTTCGATTTCTCTACCTTGAAGCCCATCAAAGTTCCCACACAAATCCCCTTCAGACCCTCTTCCATGGATCATCACAAAAAGGGTGCCCCAGAGACAGAGTTTTTTACTGAGTATGGAGAGGCGAGTCAATATCAGATCCAAGAGGTTGTTGGAAAAGGAAGTTACGGCGTTGTGGGTTCTGCCATTGATACTCACACAGGTGAAAAGGTTGCAATCAAGAAAATCAATGATGTTTTTGAGCATGTATCAGATGCCACGCGGATCCTTAGAGAAATTAAGCTCTTGCGGTTGCTTAGACATCCTGATATCGTGGAAATTAAGCATATTATGCTTCCTCCTTCGCGGAGAGAGTTCAGGGATATCTATGTTGTGTTTGAGTTGATGGAATCCGACCTCCATCAAGTAATCAAGGCAAATGATGATCTTACTCCTGAGCACCATCAATTTTTCTTGTACCAACTTCTTAGGGGCCTGAAATATATACATACAGCAAACGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTTGCTAACGCTGATTGCAAACTAAAAATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCCGCTATATTCTGGACTGATTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAATACACCCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTTGTGCACCAATTGGATCTGATGACTGATTTGCTTGGCACTCCTCCTCCTGAGTCCATTGCAAGGATTCGAAATGAAAAGGCTAAAAGGTATCTTAATAGCATGAGAAAAAAGCAACCAATTCCATTCTCCCAAAAATTTCCAAATGCAGATCCGTTGGCTCTTCGTTTGCTGGAGCGCCTACTTGCCTTTGATCCTAAAGACCGTCCAACAGCTGAAGAGGCATTATCTGATCCTTACTTCATTGGTTTGGCAAACATGGACCGCGAACCATCCACTCAACCCATTTCAAAACTTGAGTTTGAATTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTGGAGTATCATCCCCAAATGCTCCAGGAATATCTTCGTGGTGGAGATCAAACTAGCTTCATGTATCCAAGTGGGGTCGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGTACTCCACCATTGCAGAGACAGCATGCCTCCTTACCTAGAGAGCGAGTTTGTGCTCCCAAGGATGAAAGTAAACAAAACGATGATTCTGAAAAGCCGAGTGGATCAAATCTTCAGCAGAGTCCTCCAGGTTCTGATGAGACAGGTGCTCAAAATGAAACCTCCAAACCCAACTACAGTGGACGTAGCTTATTGAAGAGTGCCAGTATTAGTGCTTCCAAGTGTGTAGTTGTGAAACAAAATAAAGATCCAGAGCAAGAGCCAATTACGGAGGTAAATGATGAGGCAGTGGATGGAGTGACAGATGAGGTAGCTGCCCTTCATGTTTGA	1758	0.4357	MGGGGTLVEGIRRLFQRRASASSSDDHNHNNANNSRVSLRDLRAQLASIPNQDIPDFDFSTLKPIKVPTQIPFRPSSMDHHKKGAPETEFFTEYGEASQYQIQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKAKRYLNSMRKKQPIPFSQKFPNADPLALRLLERLLAFDPKDRPTAEEALSDPYFIGLANMDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPPLQRQHASLPRERVCAPKDESKQNDDSEKPSGSNLQQSPPGSDETGAQNETSKPNYSGRSLLKSASISASKCVVVKQNKDPEQEPITEVNDEAVDGVTDEVAALHV	585

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g00074	585	ProSitePatterns	Protein kinases ATP-binding region signature.	106	130	IPR017441	GO:0005524
	Pumo6g00074	585	FunFam	Mitogen-activated protein kinase	186	414	-	-
	Pumo6g00074	585	MobiDBLite	consensus disorder prediction	507	541	-	-
	Pumo6g00074	585	CDD	STKc_TDY_MAPK	99	436	-	-
	Pumo6g00074	585	FunFam	Mitogen-activated protein kinase	89	194	-	-
	Pumo6g00074	585	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	99	443	-	-
	Pumo6g00074	585	MobiDBLite	consensus disorder prediction	18	37	-	-
	Pumo6g00074	585	Gene3D	Transferase(Phosphotransferase) domain 1	186	414	-	-
	Pumo6g00074	585	ProSitePatterns	MAP kinase signature.	135	238	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Pumo6g00074	585	FunFam	Mitogen-activated protein kinase	415	437	-	-
	Pumo6g00074	585	MobiDBLite	consensus disorder prediction	470	541	-	-
	Pumo6g00074	585	Pfam	Protein kinase domain	100	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g00074	585	SMART	serkin_6	100	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g00074	585	Gene3D	Phosphorylase Kinase; domain 1	116	437	-	-
	Pumo6g00074	585	MobiDBLite	consensus disorder prediction	490	506	-	-
	Pumo6g00074	585	ProSiteProfiles	Protein kinase domain profile.	100	391	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g00074	585	SUPERFAMILY	Protein kinase-like (PK-like)	96	396	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g00074	Pumo-Chr6	823982	828717	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g00074	1	584	MAP Kinase Gene Family	AT1G73670	71.380	0.0	833

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Pumo6g00074		Pkinase	4.7e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g00074	-		-	gmx:100780831	1084.32