Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00073 ATGGACCCAGCTTTGATCCCTCCCCCTCCGGCCATCTCCACCGCCGTCCCCTTCACTATCGAACCCCCCCCCGACAACGCCAACCCTAACCCCAACCACCCTCCTTACGATGAGATGATATACACAGCAATTGGGGCTCTGAAGGAGAAAGATGGTTCGAGCAAGCGAGCCATAGGAAAATACATAGAGCAAGTGTACAAGGACCTTCCACCCACTCACTCTGCTCTGTTGACTCACCATCTCAACCGTTTGAAATCCGCCGGCCTTCTCGTCATGGTCAAAAAATCTTACAAGCTCCCTGGATCTGATCCTCTTCCTGCATCTCCTGTGCTTCAAGCCCAAAAGAGCCGTGGTCGGCCCCCCAAGCCCAAACCCCAGCCCGTCTGGCCTGCGCTAGGCCTCAACGACAACCCTGCCGTTCAATCCGCAAAAAGAGGCCCAGGTCGTCCGAAAAAGATTGGAGGATCCGTGGCCGTGAGCCCGGGCCCGGGCACGGTGGTGCCAGGCCGAAGAGGTCGTCCACCTGGGACCGGGAGATCTAAGCTGCCCAAGAGGCCTGGCCGTCCTCCCAAGCCCAAATCCGTGTCCGCCATCTCCAGTGGACTCAAACGACGTCCAGGCCGCCCACCCAAAGCCCAATCGAACGTGACCGTCATCCCCTTCGCAGCCCCTGTTGCTCCCGGCCTGCCCACAGTGCAGCCCATCGTTCCAACTGCTTCCGTGCCCAATGGGTCTCCCAGGCCCAGAGGAAGGCCCAAAAAGAGTGTTGCTGGTGTGGTGGCTCCGGCGCTATCTGCCGTCGGTGGTGCACCACGTGGTCGTGGCCGTGGACGGCCACGTGGGGTCCTTCCGGTGGTGAGGCCGGGTCGGCCTCAGAAGCTCGCAGTAGGAAGGCCCAAGAATCCTGCAAGAAGGCCCGTGGGCCGCCCAAAGGGAGCGACAGCTGCTGCAATTACAGCACATAAGGCTGCTAATGAAGATCTAAGGAAGAAGCTTGAACACTTTCAATCAAAAGTGAAGGAGTCTCTTGGCACGCTTAAGCCTTTTTTTAACCATGAAAGTCCAGTCACTGCAATTGCAGCAATTCAAGAGTTGGAAGTACTGTCAACTTTGGACCTTAAAGCACCATTGAGGGATGAGAGTCAGCAACAGCCACAGCCGCTGCCACAGACACAGGTGTATGATCAGCAATATCCCCAGCCACAGCCACAGCTGCAGCAATTTTTTCAACCACATACATCAGCCCCGAGCTAG 1254 0.5734 MDPALIPPPPAISTAVPFTIEPPPDNANPNPNHPPYDEMIYTAIGALKEKDGSSKRAIGKYIEQVYKDLPPTHSALLTHHLNRLKSAGLLVMVKKSYKLPGSDPLPASPVLQAQKSRGRPPKPKPQPVWPALGLNDNPAVQSAKRGPGRPKKIGGSVAVSPGPGTVVPGRRGRPPGTGRSKLPKRPGRPPKPKSVSAISSGLKRRPGRPPKAQSNVTVIPFAAPVAPGLPTVQPIVPTASVPNGSPRPRGRPKKSVAGVVAPALSAVGGAPRGRGRGRPRGVLPVVRPGRPQKLAVGRPKNPARRPVGRPKGATAAAITAHKAANEDLRKKLEHFQSKVKESLGTLKPFFNHESPVTAIAAIQELEVLSTLDLKAPLRDESQQQPQPLPQTQVYDQQYPQPQPQLQQFFQPHTSAPS 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00073 417 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 32 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo6g00073 417 Coils Coil 318 338 - -
Pumo6g00073 417 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Pumo6g00073 417 SMART AT_hook_2 203 215 IPR017956 GO:0003677
Pumo6g00073 417 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Pumo6g00073 417 SMART AT_hook_2 304 316 IPR017956 GO:0003677
Pumo6g00073 417 SMART AT_hook_2 246 258 IPR017956 GO:0003677
Pumo6g00073 417 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Pumo6g00073 417 SMART AT_hook_2 273 285 IPR017956 GO:0003677
Pumo6g00073 417 FunFam Histone H1.2 29 109 - -
Pumo6g00073 417 Pfam linker histone H1 and H5 family 33 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo6g00073 417 Gene3D - 29 109 IPR036388 -
Pumo6g00073 417 MobiDBLite consensus disorder prediction 98 215 - -
Pumo6g00073 417 MobiDBLite consensus disorder prediction 376 417 - -
Pumo6g00073 417 SUPERFAMILY "Winged helix" DNA-binding domain 29 106 IPR036390 -
Pumo6g00073 417 CDD H15 36 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo6g00073 417 PANTHER HISTONE H1 21 280 - -
Pumo6g00073 417 MobiDBLite consensus disorder prediction 1 31 - -
Pumo6g00073 417 MobiDBLite consensus disorder prediction 1 36 - -
Pumo6g00073 417 MobiDBLite consensus disorder prediction 236 314 - -
Pumo6g00073 417 PRINTS AT-hook-like domain signature 114 124 IPR017956 GO:0003677
Pumo6g00073 417 PRINTS AT-hook-like domain signature 244 254 IPR017956 GO:0003677
Pumo6g00073 417 PRINTS AT-hook-like domain signature 142 153 IPR017956 GO:0003677
Pumo6g00073 417 SMART h15plus2 30 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00073 Pumo-Chr6 814376 817858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00073 27 107 Single Myb Histone (SMH) Gene Family AT1G49950 43.373 2.24e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00073 - - gmx:547676 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00073 6 814376 817858 Pumo6g00073 6 814376 817858 ECH