Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00070 ATGGCTTCAAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGCGATTATGATGAGGAGGTTGAAACCACGGCGGGTGAATCTGCTAGTCAAGCAGTGACAAGCAGATACCTGCAGGATAATGCAAGTGACAGTGATGACTCTGATGGCCAAAAGCGCGTTGTGAGGTCAGCAAAAGATAAGCGTTTTGAGGAGATGGCTTCCACTGTTGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCAAGAGAGTTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGTGTCACTGAGTCTGAGAAGGTCCCCAATCTTTACATCAAGGCACTCGTGATGTTGGAAGATTTCTTGGCTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAACTGAAGAAGAATAATAAGCAGTATGAGGACTTGATTAATAAGTGCAGGGAGAGCCCTGAGAGCGAGGAGGAAAAAGAAGAAGAGGAGAGCGAGGAAGAGTATGAAAGTGATGATGAGATTATTGAGCCGGAGCAGCTTCGAAAACCAGAAGCAAAATCTGATTCGGAAGCCTCTCAATATGAAGATGATAGGCCAGATGCTGGTGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGGCTTTTGGATAGACAGTTCATGAAAAACCCTAGTGAGATCACGTGGGACACGGTTAACAAGAAGTTTAAAGAGGTTGTGGCTGCCAGGGGAAGAAAGGGAACTGGTAGGTTTGAACAGGTTGAGCAGCTCACTTTCTTAACAAAAGTTGCCAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGCCTCAATGGGCATATGCCCATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTGCAGCATCCAAACATAGTGGTTGATGATTCAGTGGAACCAGATGAGAATGAAACTCAGAAAGGTCCTGAACATAATGGAACAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTCGAGTTTTTCAAGAGCCTGCAGTGCATAGATCCTCATACACGTGACTATGTTGAGAGACTTAGGGATGAGCCCACGTTTCTGGTTCTTGCTCAGAATGTCCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCGCTTCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAAGGGGTTTATGATGCTATGAGAAAATTGACAGAAGATGGAGATAATGGAGGGGAGGCTAGTGAGAAGGAATTTGAGGAATCAAGAATTCCTACTGCATTTGTTGTTACCCCAGAGGTTGTTGCGCGGAAACCCACCTTCCCTGAGAATAGCAGGACCCTGATGGATGTATTGGTATCTTTGATATACAAATATGGTGATGAGCGAACTAAAGCACGTGCAATGCTGTGTGATATATATCACCATGCTCTTCTTGATGAGTTCTCAATAGCCCGTGATCTGCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCACATGGACATTTCAACGCAGATACTTTTTAACCGGGCTATGTCACAGTTAGGTTTATGTGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTAGCACAAGGTGTGTCCCAAAGTCGTTATCACGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGGCAGATGCCGTATCATATGCACATCAATCTAGAGCTCCTGGAGGCTGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCCAAACGGAGGGTCATTAGTAAGACTTTCCGTCGCTTGCTTGAGGTAAGCGAGAAACAAACATTTACTGGTCCACCGGAAAATGTCAGAGATCATGTTATGGCTGCCACAAGGGTTCTTCGCAAGGGAGACTTCCAGAAGGCTTTTGACATTATTGTGTCTCTTGACGTGTGGAAATTTGTGAGAAATCGAGACACCGTGCTTGAAATGCTAAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCATCCTATGAATCCTTGAGCCTGGATCAGCTCACAAAATTTTTTTATCTCTCTGTTTCTCGCACTCATAGCATTGTCAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTCTTTTCCAAGATGTTGAACACTCCAGGCTGCAGGCATTGGCATTCCAATTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAAAGCAACAGAGGCAAGGGTAGGCGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGAGATGGCCAGGACTATGCTGCTGCAGCCGCCGCTGCTGGTAGTGGAACAGCCTCTTCAGGTGGTAGGTGGCAAGACCTGTCCCTTTCTCAGCCAAGGCAAGGCAGTGTGCGTGCAGGGTATGGTGGCGGTGGTGGAAGGCCAATGGCATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAACAGGTGCTTTGCATGGAGGTTCAGGGAGGACTGCTCAAAGGGGTTCAGCATTGAGGGGTCCCCAGGGCGATATATCTACTCGCATGGTTAGCCTCAAGGGAGTTCGTGCTTAA 2787 0.4607 MASRFWTQGGSDSEEEESDYDEEVETTAGESASQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPNLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKCRESPESEEEKEEEESEEEYESDDEIIEPEQLRKPEAKSDSEASQYEDDRPDAGEGPWDQKLSKKDRLLDRQFMKNPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGHMPINVWKKCVQNMLIILDILVQHPNIVVDDSVEPDENETQKGPEHNGTIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKAASKVALRRVELIYYKPQGVYDAMRKLTEDGDNGGEASEKEFEESRIPTAFVVTPEVVARKPTFPENSRTLMDVLVSLIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNMAANVHDAKRRVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAFDIIVSLDVWKFVRNRDTVLEMLKDKIKEEALRTYLFTFSSSYESLSLDQLTKFFYLSVSRTHSIVSRMMINEELHASWDQPTGCILFQDVEHSRLQALAFQLTEKLSILAESNEKATEARVGGGGLDLPLRRRDGQDYAAAAAAAGSGTASSGGRWQDLSLSQPRQGSVRAGYGGGGGRPMALGQAAGSGYSRGRGTGALHGGSGRTAQRGSALRGPQGDISTRMVSLKGVRA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00070 928 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 716 804 IPR000717 -
Pumo6g00070 928 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 647 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo6g00070 928 MobiDBLite consensus disorder prediction 134 229 - -
Pumo6g00070 928 Coils Coil 144 171 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 45 63 - -
Pumo6g00070 928 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 876 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo6g00070 928 MobiDBLite consensus disorder prediction 27 44 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 1 63 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 194 229 - -
Pumo6g00070 928 Pfam PCI domain 655 783 IPR000717 -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 175 193 - -
Pumo6g00070 928 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 923 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Pumo6g00070 928 MobiDBLite consensus disorder prediction 135 154 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 155 174 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 842 916 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 12 26 - -
Pumo6g00070 928 MobiDBLite consensus disorder prediction 845 862 - -
Pumo6g00070 928 ProSiteProfiles PCI domain profile. 615 787 IPR000717 -
Pumo6g00070 928 SUPERFAMILY "Winged helix" DNA-binding domain 711 786 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00070 Pumo-Chr6 762878 767061 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00070 1 928 Eukaryotic Initiation Factors Gene Family AT3G56150 68.348 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00070 K03252 - gmx:100779751 1649.41