Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00062 ATGTGGATGGTTGGTTACAATGAAGGTGGTGAGTTCAACATGGCTGATTATGCATTCAATGGAAGGAAACTCAGGCCTCTCATGCCAAGGCCAGTGACTTCTCCTAACAACACTTCAAACACAAACTCTCCATGCTTAAGCCGCATTCATCATGGCACCGATTTCTTTTCACAATATCACAATCTGGCATCAGTGGCAGATCAGGGAAAGAGAGAGTTCAACCCTCCACCAGTAGTGGTGAGTTCAAGGTGGAATCCAACCCCGGAGCAGCTAAGAGCATTGGAGGAATTGTATATAAGAGGGACAAGAACACCGTCAGCGGAGCAAATCCAACAAATCACGGCACAGCTTAGAAGGTTTGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAAAATCACAAAGCAAGAGAAAGACAGAAACGCCGCCGTCAAATGGAGTCAGCTGCTGAGGGTCATCACACCCGTGACTTTGATAGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATACAAAGGGCAGCAAAAGCAGCGATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAGTTACAACATAGAAGAAACTTTATGGAGAGGAATGCCACGTGGCATATGATGCAGTTATCTTGTCCTCCCCCTCCTACAGTTTCACCCCACCTCATAAACACACCTCCTATTACCTCTACTACTAGCATGGCCACCACAACCACAGTAACAGCAAGACTAATGGACCCAAAGCTCATTAAGACTCATGATCTCAGCTTCTTTATTTCACCTAACAGAGAAAACGGTATTATCCACTTAAGCAGTATCAGCACCCAGGATGATAGCTGTGTGGAATCTCAAACCCTTCAACTTTTCCCTATAAGGAACGGGGATGATAGCAGTGATAACATTAACCAGCAAAAAGAGACAGAGGTATCAGTCTCAGCAATGAATGCACCCAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1080 0.4454 MWMVGYNEGGEFNMADYAFNGRKLRPLMPRPVTSPNNTSNTNSPCLSRIHHGTDFFSQYHNLASVADQGKREFNPPPVVVSSRWNPTPEQLRALEELYIRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHHTRDFDSTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQHRRNFMERNATWHMMQLSCPPPPTVSPHLINTPPITSTTSMATTTTVTARLMDPKLIKTHDLSFFISPNRENGIIHLSSISTQDDSCVESQTLQLFPIRNGDDSSDNINQQKETEVSVSAMNAPSQFFEFLPLKN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00062 359 MobiDBLite consensus disorder prediction 140 160 - -
Pumo6g00062 359 MobiDBLite consensus disorder prediction 143 160 - -
Pumo6g00062 359 CDD homeodomain 83 143 IPR001356 GO:0003677
Pumo6g00062 359 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Pumo6g00062 359 SMART HOX_1 79 146 IPR001356 GO:0003677
Pumo6g00062 359 Pfam Homeodomain 82 141 IPR001356 GO:0003677
Pumo6g00062 359 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 68 353 IPR044555 GO:0003700|GO:0099402
Pumo6g00062 359 SUPERFAMILY Homeodomain-like 82 148 IPR009057 -
Pumo6g00062 359 Gene3D - 80 142 - -
Pumo6g00062 359 FunFam WUSCHEL-related homeobox 4 81 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00062 Pumo-Chr6 689368 692181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00062 1 359 Wox Gene Family AT3G18010 41.013 1.32e-69 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo6g00062 Homeodomain 3.4e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00062 6 689368 692181 Pumo6g00062 6 689368 692181 ECH