Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00056 ATGGGAGATACACCAAAGTCGCTCATGGAAGACTTACTCGGCCTTTTAAGGATTCACATCAAGCGCGGTGTCAACCTCGCCGTTCGTGATGTCAATACTAGCGATCCATACGTCGTCGTTAAGATGGGCAAGCAGAAGCTCAAGACTCGTGTGATAAAAAAGGATGTTAATCCTGAGTGGAAGGAAGATCTTACGCTTTCTGTTACTGATCCAATTCGTCCATTTATACTGACTGTGTATGACCATGACACATTCAGCAAGGATGACAAAATGGGAGATGCAGAATTTGACATCTCACCATACATAGAAGCCTTAAAGATGAACTTAGAAGACCTCCCCAGTGGAACTATAATCACAAGAATACAACCAAGCAGGCAAAACTGCCTGGCGGAGGAAAGTTGCATCACTTACAGCAATGGCAAAATTATCCAAGATGTTGTCCTTAGATTGCGACACGTGGAATGCGGTGAAGTCGAAATCCAATTGCAATGGATTGATCTTCCTGGCTCCAAGGGTTTATGA 522 0.4387 MGDTPKSLMEDLLGLLRIHIKRGVNLAVRDVNTSDPYVVVKMGKQKLKTRVIKKDVNPEWKEDLTLSVTDPIRPFILTVYDHDTFSKDDKMGDAEFDISPYIEALKMNLEDLPSGTIITRIQPSRQNCLAEESCITYSNGKIIQDVVLRLRHVECGEVEIQLQWIDLPGSKGL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00056 173 SMART C2_3c 15 110 IPR000008 -
Pumo6g00056 173 CDD C2_ArfGAP 13 156 - -
Pumo6g00056 173 Gene3D C2 domain 10 171 IPR035892 -
Pumo6g00056 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 11 171 IPR044562 -
Pumo6g00056 173 Pfam C2 domain 14 100 IPR000008 -
Pumo6g00056 173 ProSiteProfiles C2 domain profile. 1 111 IPR000008 -
Pumo6g00056 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 108 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00056 Pumo-Chr6 646016 647363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00056 46 173 C2H2 Transcription Factor Family AT1G70790 60.769 1.28e-52 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00056 - - gmx:100775652 325.479