Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00043 ATGCTGCCTCACAAGCACACTCTCGTGGTTGTGGCGGTCACACTGGCGCTGGTGGTCGCAGCAGCAGAAGCAGATCTGGCGTCGGAGCGAGCCGCATTGCTCGCTCTCCGTTCGGCCGTGGGAGGCAGAACCCTCTTCTGGAACGCCACCAGGGAGAGCCCCTGCAACTGGGCCGGGGTCCAATGCGAGCACGACCACGTGGTGGAGCTGCACCTCCCCGGAGTGGCTCTCTCCGGCGAAATCCCGGTCGGAATATTCGGGAATCTGAGCCAGCTCCGCACCCTGAGTCTCCGTTTCAACGCGCTGAGGGGTTCCCTCCCTTCAGATCTGGCGTCCTGCATCAACCTCCGGAACCTGTACATCCAGCGGAACTTGCTGAGCGGGGAAATCCCAGCGTTTTTGTTTAAGTTACCGGACCTGGTTCGCTTGAACATGGGCTTCAACAACTTCTCCGGCCCATTTCCCACCGCCTTCAACAACCTAACCCGCTTGAAAACTCTCTTTCTCGAAAACAACCAGCTCTCCGGCCCAATCCCCGACTTGAACAAACTCACCCTCGACCAGTTCAACGTCTCCAACAACGTCCTCAACGGCTCTGTCCCTCTTAAGCTTCAGACATTCCCTCAGGACTCTTTTCTAGGTAACTCCCTCTGTGGCCGACCCCTCTCTCTCTGTCCCGGAGATGTTGCCGATCCTATCTCCGTCGACAACAACGCCAAGGGCAACAGTAACAAGAAGAAGAACAAGTTGTCTGGGGGCGCCATAGCGGGAATTGTTGTCGGATCGGTGGTGTGTCTTCTCTTGCTCGTGTTCTTCTTGATTTTCCTGTGCAGGAACAAGAGTGCCAAGAAGACCAGCGCGGTCGACATTGCCACTATCAAACATCCTGAGACCGAGTCTGAGGTTCTCGCTGACAAGGGGGTTTCGGATGTCGAGAACGGTGGTCATGCCAATGGGAATTCTGCTGTGGCGGCGGCGGCGGCGGCGGGGAATGGTGGTAGCAAGGCGGAAGGGAACGGTGGTGGGGCGAAGAAGTTGGTGTTTTTTGGGAATGCGGCCAGGGCGTTCGATTTGGAAGATTTGCTTAGGGCTTCGGCGGAGGTTTTGGGGAAAGGGACATTCGGGACGGCGTACAAGGCGGTGTTGGAGGCGGGGCCGGTGGTGGCGGTGAAGAGGTTGAAGGATGTGACGATTTCGGAGAAGGAATTTAAGGAGAAGATTGAGGCGGTGGGAGCGATGGATCACGAGAGTTTGGTCCCTCTCAGAGCTTACTATTTCAGCAGGGATGAGAAGCTCCTTGTCTATGATTACATGCCCATGGGAAGCTTGTCTGCACTTTTACATGGTTCGTCAGCTTTTCCATTCCCTTTTAAGTTTTGTGCTTGCTTTTCACTCTCTTTGGACTATCATTACTTACCGCAATTGTCTTTCTTTTTTGGGGGTAAAAATGCATCATGCCTATGTTACTGA 1470 0.549 MLPHKHTLVVVAVTLALVVAAAEADLASERAALLALRSAVGGRTLFWNATRESPCNWAGVQCEHDHVVELHLPGVALSGEIPVGIFGNLSQLRTLSLRFNALRGSLPSDLASCINLRNLYIQRNLLSGEIPAFLFKLPDLVRLNMGFNNFSGPFPTAFNNLTRLKTLFLENNQLSGPIPDLNKLTLDQFNVSNNVLNGSVPLKLQTFPQDSFLGNSLCGRPLSLCPGDVADPISVDNNAKGNSNKKKNKLSGGAIAGIVVGSVVCLLLLVFFLIFLCRNKSAKKTSAVDIATIKHPETESEVLADKGVSDVENGGHANGNSAVAAAAAAGNGGSKAEGNGGGAKKLVFFGNAARAFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVTISEKEFKEKIEAVGAMDHESLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGSSAFPFPFKFCACFSLSLDYHYLPQLSFFFGGKNASCLCY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00043 489 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Pumo6g00043 489 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Pumo6g00043 489 FunFam pollen receptor-like kinase 1 333 437 - -
Pumo6g00043 489 PANTHER OS05G0588300 PROTEIN 10 454 - -
Pumo6g00043 489 SUPERFAMILY L domain-like 47 204 - -
Pumo6g00043 489 Gene3D Ribonuclease Inhibitor 139 225 IPR032675 -
Pumo6g00043 489 ProSiteProfiles Protein kinase domain profile. 363 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00043 489 SUPERFAMILY Protein kinase-like (PK-like) 367 464 IPR011009 -
Pumo6g00043 489 Gene3D Ribonuclease Inhibitor 28 136 IPR032675 -
Pumo6g00043 489 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Pumo6g00043 489 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Pumo6g00043 489 Gene3D Phosphorylase Kinase; domain 1 335 437 - -
Pumo6g00043 489 Pfam Protein kinase domain 366 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g00043 489 FunFam Probable inactive receptor kinase RLK902 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00043 Pumo-Chr6 491198 492667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00043 25 450 Receptor kinase-like Gene Family AT1G48480 65.668 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Pumo6g00043 Pkinase 3.7e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00043 - - gmx:100818955 688.723