Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00040 ATGAGCTCGCAAGAGCGAAGCCAGCGGTCGAGGGTTCCTCGTCAGGAATGGATTCGTAGAGGATCCACTAATCAGAATCAGAATGGGAATGGTGATGTTGCTGGTTGTTCCAATCCAACAACTCGCCAAAGGCCCAAGAATAATAATAATAATAATGTGCACAAGGGATTGAATTCGATTTCCAGGGACTCTAATTTGCCTCAGCTGCTGCAAGAGATTCAGGATAAGCTCGTCAAAGGTGCTGTCGAATGCATGATTTGCTATGACATGGTGCGCAGGTCTGCGCCTATCTGGTCTTGCTCCAGTTGCTTCTCCATCTTTCACCTCAATTGTATAAAGAAGTGGGCGCGAGCGCCCACGTCTGTGGATTTGTCTGTTGAGAAGAACCAGGGGTTCAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCATCCAAGGAGATTAGGTATCTATGCTTCTGTGGAAAGAGGCCAGAGCCGCCTTCCGATTTGTATCTCATGCCGCATTCCTGTGGAGAACCATGTGCCAAGCCTCTTGAGAGGGACCTTGGAGGGGATAAGGAGGTTCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCCGGCCCGTGCCCTCCTTGCAAAGCATTTGCCCCTCCACGTTTGTGTCCTTGTGGCAAGAAAAATATTACCACTCGTTGCTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGCGAAAAGCTTCTTCAATGTGGGCGTCATCGGTGTCAGCAAATCTGTCATCTGGGTCCTTGTGATCCTTGTCAGGTTCCAATCAATGCCTCTTGCTTTTGCACTAAAAAGATGGAGGTAATTCTTTGTGGGGAGATGGCTGTGAAGGGTGAAATCAGAGCAGATGGTGGAGTATTTTCTTGTGGTTCCACTTGTGGAATGAAACTTAATTGCGGTAATCATATCTGTATTGAGACGTGTCATCCAGGCAGCTGTGGGGAGTGTGAATTATTACCATCCCGAATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAGGATGAACGCCAGAGTTGTTTAGACCCAATTCCTACCTGTTCACAAGTATGTGGCAAGTCCCTTCCTTGCGGGATTCATCATTGTGAAGAGGCATGCCATGCCGGGGATTGTTCTCCTTGTCTGGTTCTAGTTTCCCAGAAGTGTCGATGTGGCTCGACTTCCCGAACTGTTGAGTGCTGCAAGACAAAAATGGAAAATGAGAAATTTACTTGTGAAAGCCTTGTGGGCAGAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCACTTTCTAATCCAAATAATATTCTAA 1341 0.4743 MSSQERSQRSRVPRQEWIRRGSTNQNQNGNGDVAGCSNPTTRQRPKNNNNNNVHKGLNSISRDSNLPQLLQEIQDKLVKGAVECMICYDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDLSVEKNQGFNWRCPGCQSVQLTSSKEIRYLCFCGKRPEPPSDLYLMPHSCGEPCAKPLERDLGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQRCEKLLQCGRHRCQQICHLGPCDPCQVPINASCFCTKKMEVILCGEMAVKGEIRADGGVFSCGSTCGMKLNCGNHICIETCHPGSCGECELLPSRIKTCCCGKTRLEDERQSCLDPIPTCSQVCGKSLPCGIHHCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKMENEKFTCESLVGRKRIVEGIDVVKGVVHFLIQIIF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00040 446 CDD NF-X1-zinc-finger 360 408 - -
Pumo6g00040 446 SMART znfxneu3 193 211 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 SMART znfxneu3 370 389 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 SMART znfxneu3 312 331 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 SMART znfxneu3 248 267 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 16 426 IPR034078 GO:0003700
Pumo6g00040 446 CDD NF-X1-zinc-finger 302 347 - -
Pumo6g00040 446 MobiDBLite consensus disorder prediction 17 60 - -
Pumo6g00040 446 Pfam NF-X1 type zinc finger 248 266 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 Pfam NF-X1 type zinc finger 312 329 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 Pfam NF-X1 type zinc finger 195 210 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 Pfam NF-X1 type zinc finger 370 387 IPR000967 GO:0005634|GO:0008270
Pumo6g00040 446 ProSiteProfiles Zinc finger PHD-type profile. 81 142 IPR019787 -
Pumo6g00040 446 SUPERFAMILY RING/U-box 83 143 - -
Pumo6g00040 446 ProSiteProfiles Zinc finger RING-type profile. 84 140 IPR001841 -
Pumo6g00040 446 ProSitePatterns Zinc finger PHD-type signature. 84 139 IPR019786 -
Pumo6g00040 446 CDD RING-CH-C4HC3_NFX1-like 83 140 - -
Pumo6g00040 446 MobiDBLite consensus disorder prediction 1 60 - -
Pumo6g00040 446 CDD NF-X1-zinc-finger 238 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00040 Pumo-Chr6 426454 427794 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pumo6g00040 zf-NF-X1 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00040 K12236 - gmx:106799700 780.785