Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00035 ATGTCAAGGTTGAGGTCTTGTTATGCTGGAGATGCATGCCCATTGCGCAAATTTGTCATTCATCCTCATAACCGGTGGTACCTGGCGTGGAAGCACTTCATTCTGATATGGGCAGTGTACTCATCCTTCTTCACTCCCATGGAGTTCGGTTTCTTTCGAGGCTTGCCCCACAAGATTTTCCTCCTCGACATCGCCGGCCAATTGGCATTCCTGATGGACATAGTCGTCCAGTTCTTCGTTGGCTATCACGACCTCCACTCCAACTCCGTCTCCTTGGTCCTCGACCACTCCAAAATCGCCCTCAGGTACCTCAAGTCTCATCGCTTCCTCCTCGACCTTCTCGGCTGTCTCCCCTGGGACTACATTTACAAACTCGCCGGAAACAACGAGATCCTCCGCTATCTACTTTGGATAAGGCTTAGCCGTGCTCTCAGAGTCACCGACTTCTTCGAGACCCTCGAGAAGGACACCAGGGTCAATTACTTGTTCACCAGAATCGTCAAGCTCTTCGTCGTTGAACTTTACTGCACCCACACTGCTGCATGCATTTTTTACTATCTCGCCACCACCATGCCTCCTTCCCAGGAAGGTTATACCTGGATCGGTAGCTTGAAGATGGCTGACTATGCTTATTCTGACTTCAGACAAATTGATCTCTGGAAGCGTTACGTCACCTCCCTCTACTTCGCTATTGTTACCATGGCCACTCTTGGCTACGGAGACATCCATGCAGTCAACGTTAGGGAAATGATATTTGTCATGATTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTTCTCGGCAACATGACTGCCTTGATTGTCAAGGGATCTAAGACTGAGAGATTCAGAGATAAAATGTCTGATATTGTTAACTACGTCAATAAGAACAATTTGGACACCCAGATATGTCACCACATTCAAGACCATTTGCGCTTAAAGTATCATCAAAGTTACACCGGATCTTCTGTTCTTCAGGACATACCAACCACCATTCGCACAAAGATTTTAATAAGTTTGTACGAGCAATTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTGCAGGCTTTATAAAGCAGATTGCAACCAAAGTGCATGAAGAGTTTTTCCTCCCAGGAGAATTTGTTACGGAGCAAGGAGATATCGCAGATCAACTCTACTTTGTATATCATGGTGAGCTGCATGAGATAAGGATGGAAGATGGTGATACAGAAGAAAAGACAATCACATTGCATACCTATAGTTCTTTCGGCCAGGTTTCTTTTTTTTGCAATATGCCTCAAACTTCCACGGTTGAAGCTCATGAATTTTGCAAGGTTTTACGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTTTAGATGGTCGTATTGTCTTGAACAATCTCCTTGAGGTAAAAGACTTGAGTCTCCAACGTAAGCTTTTGGTATCAGACTTCAACCTGACTATTGGAAACATGGAAACAGAGCTGGCTACGAGGATGAACTGTGCTGCCCATGATGGTCATCTTGATCTTGTGAAACGTTTGGTTGGATTTGGGGCAGATCCCAATAAGACTGATTATGATGGCAGAACACCCTTGCATATCTCAGCATCAAAAGGATATGTAGATATTTCTTCATATCTTGTTGAACAAGGAGTAAATATCAACTATGCAGATAAATTTGGCACCACTCCCTTGCTTGAAGCCATCAAGAATGGACACGAAGAAGTAGCATCTATACTTGTTAACGCAGGAGCTATCCTTACTATTGATGATGTTGGCAATTTTCTCTGCATGACTGTTGCCAAGAAGGAGTTGGACCTTTTAAAAAGGGTTCTGGCTTGTGGAGTTAATCCAAATGCCAAAAATTATGATCAACGTACACCTCTTCACATAGCTGCCTCTGAAGGTTTGTTTACAACGGCTGAATTACTTCTAGAAGCAGGAGCAAGTGTTTTATCTAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACTGGTGGAAATAGAAATATGATCAAAATGCTTGAAGTTGCAAAAGCTTCTCAGTTGGCTGAGTTGTCCAATAATATTCATGAAACTCAAGCAACACGAATGTTGCAGTCAAGAGACGAAATTCCCAAAAAGAGATGTATAGTATTTCCTTTCCACCCATGGGATTACAAAGCGGATAGAAAAGAGGGAGTGGTCCTATGGGTTCCAGAAAGCATTGAAGAGCTTATAAAGGAGGCGACAAAACATTTGGAAATTCCAAAGGGTTCCTGTATTTTATCAGAACAATGTGGCAAAATTATTTATGTAGACACGATTAACAATGATGAGAAGCTATTTCTGGTGAGTGAAGCACAGACTGAGGTGAAATGTTCTGATCATCCAACTCCAAGTGTTCAGGCACAGCAGTACCAACAAACAATGTAA 2424 0.427 MSRLRSCYAGDACPLRKFVIHPHNRWYLAWKHFILIWAVYSSFFTPMEFGFFRGLPHKIFLLDIAGQLAFLMDIVVQFFVGYHDLHSNSVSLVLDHSKIALRYLKSHRFLLDLLGCLPWDYIYKLAGNNEILRYLLWIRLSRALRVTDFFETLEKDTRVNYLFTRIVKLFVVELYCTHTAACIFYYLATTMPPSQEGYTWIGSLKMADYAYSDFRQIDLWKRYVTSLYFAIVTMATLGYGDIHAVNVREMIFVMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDIVNYVNKNNLDTQICHHIQDHLRLKYHQSYTGSSVLQDIPTTIRTKILISLYEQFIQKVSLFKGCSAGFIKQIATKVHEEFFLPGEFVTEQGDIADQLYFVYHGELHEIRMEDGDTEEKTITLHTYSSFGQVSFFCNMPQTSTVEAHEFCKVLRLDKKSFTEILKIYFLDGRIVLNNLLEVKDLSLQRKLLVSDFNLTIGNMETELATRMNCAAHDGHLDLVKRLVGFGADPNKTDYDGRTPLHISASKGYVDISSYLVEQGVNINYADKFGTTPLLEAIKNGHEEVASILVNAGAILTIDDVGNFLCMTVAKKELDLLKRVLACGVNPNAKNYDQRTPLHIAASEGLFTTAELLLEAGASVLSKDRWGNTPLHEAHTGGNRNMIKMLEVAKASQLAELSNNIHETQATRMLQSRDEIPKKRCIVFPFHPWDYKADRKEGVVLWVPESIEELIKEATKHLEIPKGSCILSEQCGKIIYVDTINNDEKLFLVSEAQTEVKCSDHPTPSVQAQQYQQTM 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00035 807 FunFam Potassium channel KAT2 339 475 - -
Pumo6g00035 807 PRINTS EAG/ELK/ERG potassium channel family signature 267 276 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo6g00035 807 PRINTS EAG/ELK/ERG potassium channel family signature 63 73 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo6g00035 807 PRINTS EAG/ELK/ERG potassium channel family signature 223 240 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo6g00035 807 PRINTS EAG/ELK/ERG potassium channel family signature 175 185 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pumo6g00035 807 ProSiteProfiles cAMP/cGMP binding motif profile. 351 454 IPR000595 -
Pumo6g00035 807 CDD CAP_ED 351 465 IPR000595 -
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat region circular profile. 625 657 - -
Pumo6g00035 807 Pfam KHA, dimerisation domain of potassium ion channel 711 780 IPR021789 -
Pumo6g00035 807 PANTHER POTASSIUM CHANNEL AKT1 16 785 IPR045319 GO:0005249|GO:0006813
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat profile. 528 560 IPR002110 GO:0005515
Pumo6g00035 807 Gene3D - 490 592 IPR036770 -
Pumo6g00035 807 SMART ANK_2a 528 557 IPR002110 GO:0005515
Pumo6g00035 807 SMART ANK_2a 592 621 IPR002110 GO:0005515
Pumo6g00035 807 SMART ANK_2a 625 654 IPR002110 GO:0005515
Pumo6g00035 807 SMART ANK_2a 561 590 IPR002110 GO:0005515
Pumo6g00035 807 SMART ANK_2a 658 687 IPR002110 GO:0005515
Pumo6g00035 807 SMART ANK_2a 495 524 IPR002110 GO:0005515
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat profile. 625 657 IPR002110 GO:0005515
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat region circular profile. 528 560 - -
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat profile. 561 593 IPR002110 GO:0005515
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat region circular profile. 561 592 - -
Pumo6g00035 807 SUPERFAMILY cAMP-binding domain-like 279 469 IPR018490 -
Pumo6g00035 807 SMART cnmp_10 351 469 IPR000595 -
Pumo6g00035 807 Pfam Ankyrin repeats (3 copies) 602 678 IPR002110 GO:0005515
Pumo6g00035 807 Pfam Ankyrin repeats (3 copies) 501 590 IPR002110 GO:0005515
Pumo6g00035 807 Pfam Cyclic nucleotide-binding domain 371 455 IPR000595 -
Pumo6g00035 807 Gene3D Jelly Rolls 322 482 IPR014710 -
Pumo6g00035 807 Gene3D - 593 708 IPR036770 -
Pumo6g00035 807 ProSiteProfiles KHA domain profile. 712 798 IPR021789 -
Pumo6g00035 807 SUPERFAMILY Ankyrin repeat 450 681 IPR036770 -
Pumo6g00035 807 FunFam Potassium channel SKOR 28 276 - -
Pumo6g00035 807 Gene3D - 29 277 - -
Pumo6g00035 807 PRINTS Ankyrin repeat signature 529 544 IPR002110 GO:0005515
Pumo6g00035 807 PRINTS Ankyrin repeat signature 641 655 IPR002110 GO:0005515
Pumo6g00035 807 ProSiteProfiles Ankyrin repeat profile. 495 527 IPR002110 GO:0005515
Pumo6g00035 807 Pfam Ion transport protein 29 275 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo6g00035 807 SUPERFAMILY Voltage-gated potassium channels 21 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00035 Pumo-Chr6 394022 400940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00035 609 692 Ion Channels AT5G37500 31.132 1.11e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00035 K21867 - gmx:100798698 1367.06