Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00033 ATGGTTTTAGGGTGGAGAAGATTGAGAAGAGGGATAAAGAAGCGAGAATGCAAGGTGGAGGAGGTGGTGACTCCGAAGCAGTTCCGGTGCCCAATTTCTCTGGACTTGATGAAAGACCCTGTGACCTTGTGCACTGGGATTAGCTACGATCGAGATACCATAGAAAGGTGGTTTCAGGAGGTAAACTTCAACTTGACATGCCCGGTCACCAACCAGATCCTCACGAACTTGGATCTCATTCCGAACCACACGCTTAGGATGATGATCCAAGAGCTGGTGTCAACAGCGTGGCGTCCAAAGAATCCCAACCCCGAGAGTGCCCATTACCCCAATCCAGGTACAAGACCTCCTTCTCCTTCTCCATGCCAAGGCCTCCCGTCTCGACCAACACGCCTGCCTTGA 402 0.5174 MVLGWRRLRRGIKKRECKVEEVVTPKQFRCPISLDLMKDPVTLCTGISYDRDTIERWFQEVNFNLTCPVTNQILTNLDLIPNHTLRMMIQELVSTAWRPKNPNPESAHYPNPGTRPPSPSPCQGLPSRPTRLP 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00033 133 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Pumo6g00033 133 CDD RING-Ubox_PUB 25 79 IPR045210 -
Pumo6g00033 133 MobiDBLite consensus disorder prediction 105 126 - -
Pumo6g00033 133 SUPERFAMILY RING/U-box 17 94 - -
Pumo6g00033 133 PANTHER WDSAM1 PROTEIN 20 96 IPR045185 GO:0061630
Pumo6g00033 133 ProSiteProfiles U-box domain profile. 23 99 IPR003613 GO:0004842|GO:0016567
Pumo6g00033 133 MobiDBLite consensus disorder prediction 96 133 - -
Pumo6g00033 133 SMART Ubox_2 27 92 IPR003613 GO:0004842|GO:0016567
Pumo6g00033 133 Pfam U-box domain 25 93 IPR003613 GO:0004842|GO:0016567
Pumo6g00033 133 FunFam RING-type E3 ubiquitin transferase 24 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00033 Pumo-Chr6 391388 391789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00033 21 112 U-box Gene Family AT5G37490 50.000 3.21e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00033 - - vun:114179193 128.642