Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00025 ATGGAAGGAGGATCTGCAGGCGAGAGAGATCAGAAGAAGTGGAACAGTGTATACAGAGAGTGCTTGAGAAACCATGCAGCCAGCCTGGGAAGCTACGCCACGGACGGGTGCGGCGAGTTCACGGTGGACGGCGGGGGACTAGAATGCGCGGCGTGCGGGTGTCACCGGAACTTCCACCGGAAAGTGAAGTACCCGGCGGCGGCGATGGAGTATGGGGATGGGGGGCCGAGTAATAGTAATAATTGTAAGAAGCGGTTCAGGTCCAAGTTCACAGCAGATCAGAAGGAGAAAATGCTGGCGTTCGCGGAGAAGCTTGGTTGGAAGCTTCAGAGGAAAGATCTGGATGATGAGATTGAGAAGTTTTGCCGAAGCGTTGGTGTTAGTAGGCAAGTCTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCCTCCGCCAATCTCTCCTCTCTCACCCAGTAA 459 0.5316 MEGGSAGERDQKKWNSVYRECLRNHAASLGSYATDGCGEFTVDGGGLECAACGCHRNFHRKVKYPAAAMEYGDGGPSNSNNCKKRFRSKFTADQKEKMLAFAEKLGWKLQRKDLDDEIEKFCRSVGVSRQVFKVWMHNHKNSSSANLSSLTQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00025 152 Pfam ZF-HD protein dimerisation region 17 62 IPR006456 -
Pumo6g00025 152 NCBIfam homeobox domain, ZF-HD class 83 141 IPR006455 -
Pumo6g00025 152 FunFam Zinc-finger homeodomain protein 2 73 145 - -
Pumo6g00025 152 Gene3D - 70 146 - -
Pumo6g00025 152 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 18 62 IPR006456 -
Pumo6g00025 152 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 142 - -
Pumo6g00025 152 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 18 61 IPR006456 -
Pumo6g00025 152 SUPERFAMILY Homeodomain-like 72 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00025 Pumo-Chr6 331878 332571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00025 18 142 ZF-HD Transcription Factor Family AT4G24660 45.833 1.51e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo6g00025 ZF-HD_dimer 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00025 - - pvu:PHAVU_002G332400g 244.202