Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00023 ATGTTAGTCAATAACTCAGTTCCCACTTCGGAGCCGTTTTCCTGCTCCGAGAATGGTACTGCCACTAACAAAAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGCCACAAGGTGCCGTGGAAGCTGTTGAAGAGGGAAACACCGGTGGTGAAGAAGCGAGTGTTTGTTTGCCCTGAGCCTACTTGTTTGCACCATGACCCATGCCATGCTCTCGGTGATCTTGTTGGCATTAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAACAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACATGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGTTAATTAATTATCAATTTCGCAACTCTTTTTTTTATTCGATTGATCGGCTTTTGACTTTAAGAAAAATAGTATTTGACTGA 582 0.4777 MLVNNSVPTSEPFSCSENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRLINYQFRNSFFYSIDRLLTLRKIVFD 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00023 193 Pfam Zinc finger, C2H2 type 53 75 IPR013087 -
Pumo6g00023 193 Gene3D Classic Zinc Finger 41 126 - -
Pumo6g00023 193 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g00023 193 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Pumo6g00023 193 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Pumo6g00023 193 SUPERFAMILY beta-beta-alpha zinc fingers 52 150 IPR036236 -
Pumo6g00023 193 FunFam protein indeterminate-domain 12-like 32 100 - -
Pumo6g00023 193 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 171 IPR031140 -
Pumo6g00023 193 SMART c2h2final6 53 75 IPR013087 -
Pumo6g00023 193 SMART c2h2final6 94 124 IPR013087 -
Pumo6g00023 193 SMART c2h2final6 130 157 IPR013087 -
Pumo6g00023 193 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00023 Pumo-Chr6 313080 313748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00023 18 171 C2H2 Transcription Factor Family AT1G25250 88.535 3.11e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g00023 zf-C2H2 0.0014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00023 K25871 - gmx:100800187 353.214