Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00018 ATGGAGTACGGTAGCGGAGGTGGTGGGTCGCAGTCCCCAGGGGAGCAGGATGGTTCGGATTCCCGAGAGAGGAGGAAGCGCTATCATCGTCATACTGCCAATCAAATTCAAAGGCTTGAGTCAATGTTCAAAGAATGCCCCCATCCAGATGAAAAACAAAGGTTGCAATTAAGCAGGGAGTTAGGCCTGGCCCCGAGGCAAATCAAGTTCTGGTTCCAGAACAGGAGGACCCAAATGAAGGCCCAACACGAAAGAGCTGACAATTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATTAGGGAGGCCCTAAAGAATGTTATCTGCCCTTCTTGTGGTGGCCCTCCTCTCAACGACGATTCTTATTTTGATGACCAAAAGTTGCGGTTGGAGAACGCCCACCTCAAAGAAGAGCTTGATAGAGTATCTAGCATTGCTGCTAAGTACATTGGAAGACCAATTTCCCAACTCCCACCGGTCCAGCCTATTCATATATCGTCTCTGGACTTATCAATGGCGAGTTTTGGAAACCAAGGGATGGTTGGTCCTAGTCCTGGTCATGGACCTACTCCTTCCCTTAATCTTGATCTTCTCCCAGCAGGGACTTCATCATCCATGCCAAATTTGCCTTATCAGCCTCCTTGCCTTTCGGACATGGACAAGTCCCTCATGTCAGACGTTGCTTCCAATGCCATGGAAGAATTACTCAGGCTCGTGCAAACAAACGAACCCTTGTGGCTCAAATCAAACATCGATGGGAGAGATGTTCTTAGTTGTGATGCCTACGAAAGAATCTTCCCCAAGCCTAATACTCGCCCCAAGAATCCTAATGTTCGCATTGAAGCATCCCGAGATTCTGAAGTTGTATTAATGAATAGTTTAGCTTTGATTGACATGTTTATGGACCCAAACAAGTGGATACAACTTTTTCCCACTATTGTCTCAGTTGCAAGGACTATTCAAGTCATATCTTCTGGGATGATGGGCAGTTGTAGTGGTTCTTTGCAATTGATGTATCAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCAACTCGGGAGTTTTACTTCCTGCGTTACTGTCAGCAAATTGAGCAAGGCACATGGGCAATAGTGGACGTTTCTTATGATTTTCCCCAAGATAGCCACTTTGCTCCTCAATTTCGGTCTCATCGTCATCCTTCCGGTTGCTTGATCCAGGACATGCCTGACGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATTGAAGATAAAACTCTGCCTCATCGGCTTTATAGAAATCTTATTTATAGTGGGATGGCATTTGGAGCTGAAAGATGGCTTGCTACCCTCCAGAGGATGTGTGAAAGACTTACTTATCTAATGGTTACAAGCAATCCTACTCGGGATAATCTTGGAGGAGTAATTTCATCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCTCAAAGGATGGTCACAAATTTCTGTGCCAGCATTAGCACATCAAATGGCCATCGATGGACCACGCTCTCTGGGTTGAATGAAATCGTAGTAAGAGTCACTGTCCACAAAAGCTCAGATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACCGTCTTCAATTTCTTCAAGGATGAAAGCAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCCGTGCAAGAGGTTGCCAACATAGCAAATGGTTCGCACCCTGGTAACAGTATATCAGTTCTTCGAGCTTTCAACAGCAGTCAGAACATGTTAATACTCCAAGAGAGCTGCATAGATTCCTCTGGTTCACTTGTGGTTTATTGCCCAGTTGATCTGCCATCCATCAACATAGCAATGAGTGGTGAAGACCCTTCATACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGCCAGCTTAACCAGGAAGGAGATGGAGCATCAACCAGTTCAAACACAAATAGGAACATAGCAAGGTCTGGGTCTGGGGGTTCACTAGTTACAGTTGCATTCCAGATTCTAGTGAGCAGCTTGCCATCTGCTAAGCTCAATATGGAGTCGGTGACAACTGTTAACAATCTTATTGGCTCCACTATCCAGCAAATAAAGGCTTCCTTAAGTTGTCCTACCTAG 2172 0.4581 MEYGSGGGGSQSPGEQDGSDSRERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASFGNQGMVGPSPGHGPTPSLNLDLLPAGTSSSMPNLPYQPPCLSDMDKSLMSDVASNAMEELLRLVQTNEPLWLKSNIDGRDVLSCDAYERIFPKPNTRPKNPNVRIEASRDSEVVLMNSLALIDMFMDPNKWIQLFPTIVSVARTIQVISSGMMGSCSGSLQLMYQELQVLSPLVSTREFYFLRYCQQIEQGTWAIVDVSYDFPQDSHFAPQFRSHRHPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMVTSNPTRDNLGGVISSPEGKRSMMKLAQRMVTNFCASISTSNGHRWTTLSGLNEIVVRVTVHKSSDPGQPNGVVLSAATTIWLPTPPHTVFNFFKDESKRPQWDVLSNGNAVQEVANIANGSHPGNSISVLRAFNSSQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDPSYIPLLPNGFTILPDGQLNQEGDGASTSSNTNRNIARSGSGGSLVTVAFQILVSSLPSAKLNMESVTTVNNLIGSTIQQIKASLSCPT 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00018 723 SMART START_1 231 456 IPR002913 GO:0008289
Pumo6g00018 723 SMART HOX_1 23 86 IPR001356 GO:0003677
Pumo6g00018 723 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Pumo6g00018 723 CDD homeodomain 24 83 IPR001356 GO:0003677
Pumo6g00018 723 Pfam START domain 232 456 IPR002913 GO:0008289
Pumo6g00018 723 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pumo6g00018 723 Gene3D - 11 95 - -
Pumo6g00018 723 Gene3D - 231 456 IPR023393 -
Pumo6g00018 723 MobiDBLite consensus disorder prediction 652 672 - -
Pumo6g00018 723 SUPERFAMILY Homeodomain-like 6 82 IPR009057 -
Pumo6g00018 723 ProSiteProfiles START domain profile. 222 459 IPR002913 GO:0008289
Pumo6g00018 723 MobiDBLite consensus disorder prediction 655 672 - -
Pumo6g00018 723 FunFam Homeobox-leucine zipper protein GLABRA 2 231 455 - -
Pumo6g00018 723 SUPERFAMILY Bet v1-like 223 457 - -
Pumo6g00018 723 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 719 IPR042160 -
Pumo6g00018 723 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Pumo6g00018 723 SUPERFAMILY Bet v1-like 477 716 - -
Pumo6g00018 723 CDD START_ArGLABRA2_like 226 455 - -
Pumo6g00018 723 MobiDBLite consensus disorder prediction 1 30 - -
Pumo6g00018 723 Pfam Homeodomain 25 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00018 Pumo-Chr6 196290 202077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00018 20 723 Homeobox Transcription Factor Family AT1G73360 64.607 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo6g00018 START 2.4e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00018 K09338 - gmx:100796042 1347.03