Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00010 ATGTCTTCTGCCGCCAACGCTCCTATGCAATATTTCTGCTACGAGTGCAACCGCACCGTCTCCATTACTCGTTCCTCTGATCTCGTGTGCCCGAATTGCAACGGTGGCTTCATCGAGGAAGTGGAAAATCCAATTCCGAGCACTCCCCATCCATTCTCTTTCACGTACGAGTTTGGTGGAGACGATCTCCCCACCCTCTTCGGAGACGCTGACGCCTTCAATCCTTTGGTGTTCCTTCAGAATTACATTCAAACCCTGAGAGCCGGAGGCGCTAATATTCAGTTCGTAATCGACAATTATGGGGACCCCACTAATCTCAACCTTGGCGATTACTTCTTCGGGCCGGGTCTGGAGCAATTGATTCAGCACCTTGCGGAGAACGATCCTAACAGGTATGGGACTCCCCCAGCCTCCAAGTCTGCCGTCGAGGGGCTCCCAAACATCTCGATCACGGATGAATTGTTGGCTTCAGATTCATCACAGTGTGCGGTGTGCAAAGACACATTCGAGCTCCGGGAATTGGCCAAGCAGATGCCCTGTAAACACATTTATCATTCTGATTGCATCCTGCCTTGGTTGGAATTGCACAATTCTTGTCCTGTGTGTCGGTATGAGTTACCAACTGATGATCCTGATTACAAACAAAGTGCTCGAGGGTCTCGCGGCCAATCTTCACCTGGTGATACAGACACCTCGCAGTCACCCAGGGAGCGGAGGTTTAGGGTTTCTTTGCCCTGGCCCTTTAGGCAGTTTTCTTCCGTTGCCGAGACAAGCAATAACAACAGAAATAATAATAATAATACTGGGGAACCCAATCATAATTTTGAGTCAGAAACCAGGCAAGAAGATCTTGATTGA 858 0.493 MSSAANAPMQYFCYECNRTVSITRSSDLVCPNCNGGFIEEVENPIPSTPHPFSFTYEFGGDDLPTLFGDADAFNPLVFLQNYIQTLRAGGANIQFVIDNYGDPTNLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAVEGLPNISITDELLASDSSQCAVCKDTFELRELAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYKQSARGSRGQSSPGDTDTSQSPRERRFRVSLPWPFRQFSSVAETSNNNRNNNNNTGEPNHNFESETRQEDLD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00010 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 69 207 - -
Pumo6g00010 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 209 IPR013083 -
Pumo6g00010 285 CDD RING-H2_RNF126-like 161 203 - -
Pumo6g00010 285 MobiDBLite consensus disorder prediction 211 285 - -
Pumo6g00010 285 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Pumo6g00010 285 MobiDBLite consensus disorder prediction 250 274 - -
Pumo6g00010 285 FunFam E3 ubiquitin-protein ligase RING1-like 123 209 - -
Pumo6g00010 285 MobiDBLite consensus disorder prediction 217 231 - -
Pumo6g00010 285 SMART ring_2 162 202 IPR001841 -
Pumo6g00010 285 SUPERFAMILY RING/U-box 143 210 - -
Pumo6g00010 285 Pfam zinc-ribbon 10 40 IPR039525 GO:0061630
Pumo6g00010 285 Pfam Ring finger domain 161 203 IPR001841 -
Pumo6g00010 285 SUPERFAMILY RNA polymerase subunits 8 38 IPR029040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00010 Pumo-Chr6 112494 116043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00010 78 218 C3H Transcription Factor Family AT5G01980 43.662 9.73e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00010 K11982 - gmx:100784504 364.385