Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo65g00001 ATGGAATTTCTCATTCAAGCTGGAAAACTTAAATTAGCTGATTTACGCCATGCTTATTTAAACCCAATCAAAGTGAAACTTGATGAAAAAGCATTGCCTGCAATTCAAGCCAGTGTCGATTGTGTAGACAAAATTATTCGTGAAGGTCGCACTGCCTACGGGATTAATACAGGTTTTGGCTTGTTGGCTTCAACTAAAATCGCCCCTGAAGATTTAGAGCAATTACAACGATCATTGGTACTTTCTCATGCCGCAGGTGTTGGCGAACCTTTGGATGATGCAATGGTTCGTCTTATTATGTTGCTTAAAGCCAATAGTTTGGCACGTGGATTTTCAGGGATTCGCCTAAAAGTCATTGAAGCTTTATTGGCGTTGATTAATGCTGAAGTGTATCCACATATTCCTTTAAAAGGTTCGGTTGGTGCATCGGGTGATTTAGCGCCACTTGCGCATATGTCTTTGGTGTTGCTGGGGGAAAGTAAAGCGCGTTATCAAGGAAAATGGTTGCCTGCGGTTGAAGCATTGAAAATTGCAGGTTTAGAACCAATTTCATTGGCAGCAAAAGAGGGTTTGGCTTTACTCAATGGTACGCAAGTTTCTACAGCGTATGCGTTACGTGGTTTGTTTGAAGCGGAAGATTTATTTGCTGCGGCAACGGTATGTGGTGGGTTAAGTGTAGAAGCCATGTTAGGTTCACGTTCACCATTTGATGCGCGTGTCCACGAAGTGCGTGGGCAGCGCGGGCAAATTGATGTTGCAGCGGCATACCGTGATTTGCTTTCAGAAAATAGTGAAATTGGTCAATCACATGAAGATTGTGAAAAAGTTCAAGACCCATATTCTTTACGTTGCCAACCTCAAGTCATGGGTGCGTGTTTAACTCAAATTCGTCAAGCTGCTGAAGTGTTAGAAATCGAATCTAATGCGGTATCTGATAATCCATTGGTCTTTGCCAAAGAAGGCGATGTCATTTCTGGTGGTAATTTCCATGCAGAACCCGTGGCAATGGCAGCAGATAATTTGGCATTGGCAATTGCTGAAATTGGTTCATTATCAGAACGCCGTATTTCTATGATGATGGATCGGCATATGTCCCAACTTCCACCTTTTTTGGTTGAAAATGGCGGGATTAATTCAGGATTTATGATTGCACAAGTGACGGCTGCGGCTTTGGCAAGTGACAATAAAGCATTGGCTCATCCTGCAAGTGTGGATAGTTTACCAACTTCAGCAAACCAAGAAGATCATGTTTCTATGGCACCTAATGCTGGGAAACGCTTATGGTACATGGCAGAAAATGTTCGTGGCATTGTCGCCATTGAATGGTTAGGTGCGTGTCAGGGCTTAGATTTTCGTAAAGGTTTAAAGAGTTCTGTAAAATTGGAGCGCGCACGTAAATTGTTACGTGACCAAGTTCCTTATTATAGCGAAGACCGTTTTTTTGCGCCTGATATTGAACAAGCCAGTGATCTTTTAGCAAGTGGTTGTTTAAATCCATTGCTGCTTGAAAAGCTACTTCCAAGTTTTTAA 1530 0.4229 MEFLIQAGKLKLADLRHAYLNPIKVKLDEKALPAIQASVDCVDKIIREGRTAYGINTGFGLLASTKIAPEDLEQLQRSLVLSHAAGVGEPLDDAMVRLIMLLKANSLARGFSGIRLKVIEALLALINAEVYPHIPLKGSVGASGDLAPLAHMSLVLLGESKARYQGKWLPAVEALKIAGLEPISLAAKEGLALLNGTQVSTAYALRGLFEAEDLFAAATVCGGLSVEAMLGSRSPFDARVHEVRGQRGQIDVAAAYRDLLSENSEIGQSHEDCEKVQDPYSLRCQPQVMGACLTQIRQAAEVLEIESNAVSDNPLVFAKEGDVISGGNFHAEPVAMAADNLALAIAEIGSLSERRISMMMDRHMSQLPPFLVENGGINSGFMIAQVTAAALASDNKALAHPASVDSLPTSANQEDHVSMAPNAGKRLWYMAENVRGIVAIEWLGACQGLDFRKGLKSSVKLERARKLLRDQVPYYSEDRFFAPDIEQASDLLASGCLNPLLLEKLLPSF 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo65g00001 509 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 138 154 IPR022313 GO:0016841
Pumo65g00001 509 FunFam Histidine ammonia-lyase 1 196 - -
Pumo65g00001 509 Hamap Histidine ammonia-lyase [hutH]. 2 503 IPR005921 GO:0004397|GO:0005737|GO:0006548
Pumo65g00001 509 PANTHER HISTIDINE AMMONIA-LYASE 21 467 IPR001106 -
Pumo65g00001 509 FunFam Histidine ammonia-lyase 197 505 - -
Pumo65g00001 509 SUPERFAMILY L-aspartase-like 3 505 IPR008948 GO:0003824
Pumo65g00001 509 CDD PAL-HAL 10 452 IPR001106 -
Pumo65g00001 509 NCBIfam histidine ammonia-lyase 5 501 IPR005921 GO:0004397|GO:0005737|GO:0006548
Pumo65g00001 509 Gene3D - 3 196 IPR024083 -
Pumo65g00001 509 Gene3D Fumarase/aspartase (Central domain) 197 508 - -
Pumo65g00001 509 Pfam Aromatic amino acid lyase 10 469 IPR001106 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo65g00001 21 460 Monolignol Biosynthesis Gene Families AT2G37040 31.466 2.25e-61 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo65g00001 K01745 - acb:A1S_3405 882.093