Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo61g00003 ATGAGCAGAGCCATTTGTGCATCTGGATCCTCTCCATTTTATGAGAGAAATGGACATTTCAAGAAGTGGATTTTGGCATGGAATGGTTGTCAGTGTTTGTGGAGGACTGTTTTTCTAGTAGGCCAAGTTGCCTCTTGGCACCCCCTGGTGTTCAAACCACAAGCACCAGCACCAAGCCTTCAAGCACAATGCAAAGACCCCAACAAAGCCACTGTCCCTTGCAAAATTTTGCTGTGCCAGGGAAAAGCCAGGAGCAAGAGGAAGAGGCTTTCAGCCCCCAGAACAAAAGACACTCTAAGCACATGGTCACAACAGCACTTCACCACACAAAGTGAAGGGTTGAGTTCTGACCCTCCTCTTTTGAAACAAGCATATTGGTTGGCTGATAGTGAACTCATTGTCCCCAAGAAGAAGAAGGATGTTGAGCAAGAAGGGGTGATGATGACCAAAGTGGTGGAAGAAGAAGAAGGGGTTAATGTGGACCTTGTGGTGGTGAGGAAGGAGAAATTGGGGGAAGATTATAATTGTGAGGAGGGTGAAGTTAACAATAGTAGTAATAATAATGGGCAGCAGCACCCAATTCCAAGAAGGTGCACACATTGTCTGGCTCAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGGCCAAAAACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGAAGGTTGTTGCCAGAGTATAGGCCAGCCAAGAGTCCTACTTTTGTAAGCTATTTGCATTCCAACTCACACAAGAGAGTCATGGAGATGAGAATGGGTGTTCTCTCTACAGAGAAGTAG 807 0.4696 MSRAICASGSSPFYERNGHFKKWILAWNGCQCLWRTVFLVGQVASWHPLVFKPQAPAPSLQAQCKDPNKATVPCKILLCQGKARSKRKRLSAPRTKDTLSTWSQQHFTTQSEGLSSDPPLLKQAYWLADSELIVPKKKKDVEQEGVMMTKVVEEEEGVNVDLVVVRKEKLGEDYNCEEGEVNNSSNNNGQQHPIPRRCTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKRVMEMRMGVLSTEK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo61g00003 268 MobiDBLite consensus disorder prediction 95 116 - -
Pumo61g00003 268 FunFam GATA transcription factor 186 267 - -
Pumo61g00003 268 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Pumo61g00003 268 PANTHER GATA TRANSCRIPTION FACTOR 60 263 - -
Pumo61g00003 268 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 256 - -
Pumo61g00003 268 MobiDBLite consensus disorder prediction 87 116 - -
Pumo61g00003 268 Gene3D - 188 265 IPR013088 GO:0006355|GO:0008270
Pumo61g00003 268 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Pumo61g00003 268 ProSiteProfiles GATA-type zinc finger domain profile. 196 228 IPR000679 GO:0006355|GO:0043565
Pumo61g00003 268 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
Pumo61g00003 268 Pfam GATA zinc finger 198 232 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo61g00003 56 260 C2C2-Gata Transcription Factor Family AT4G32890 38.537 5.62e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo61g00003 GATA 1.1e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo61g00003 - - gmx:100776805 274.248