Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo60g00006 ATGGAGATTCAACATCAACAAAGCGTGAAGCTCACGGTCCACAAGAGATGGCCATCATCACCCAAAAAAACACCAAAAGAATCAGAACCAATAACCCCCACCACTCCAAAGCTGAAATGGAAGAAAATCTTCTTCCACACCAAAACCAAAACCAACCCCAAAACCCAAACCCAAATCCAAACCCCTCCAGAAGAGTTTCTCTGCCCCGTTTCCCGTTCCCTCATGTTCGACCCTGTTATAGTCTCCTCCGGCCACTCCTTCGAACGCTCCTCCGTTGAAGCTTGCAAAAATCTCAACTTTACCCCTCAACTCCCCGACGGCACCACCCCCGATTTCTCCACCCTCATCCCCAACCTCGCCCTCAAATCCGCCATCCTCAAATGGTGCCAATCCACCCACACACCCCCTCCACACCCAACCGACAACAACAACAACAACCTCGTACCAACCTTAATCTCCTCCAACCCAAACCCCGTACACACCTTAAACCCCTCGGACTCCCCAAACCTCGTACACGCAAACCCCTCCCCAGAAAAAATCTCCGACCAAGATTTGATCTTGAACTCCCTGAACGAAAACCCACCATTGAAGAATCTCTGCCACCACGCGGAAACTGAGGTTCCCATAAGACCGACACACTTGTACACAAGTTCCGAGGAATCCATAGCGACAACCTCGGCCTCAACGCCGCCGCTTCAACTCTCCACGCGCCCAAGCTGCTGCTACTACTCTTCGCCTTCATCTTCAGAACTCGAACCCGCCACAACCCTAGAAGAAGAAGAGATCACGACCAAGCTCAAGAACCCTCAACCCAGTGTAATCGAAGAAGCGCTTCTCTCTCTCAGAAAACTCACCAGAGTAAAAGAAGAAACAAGGCTTCAACTTTGCACCCCTCGGTTACTCTCCGCGTTGCGCTCCCTCGTTTTGTCGAAGCACGTGAACGTTCAGGTGAACGCTCTGGCGTCAGTGGTGAACCTCTCGTTAGAGAAGAGTAACAAGGTGAAGATCGTGCGGTCGGGGATGGTTCCGCCGTTGATCGAGGTTTTGAAGTTTGGATCCTCTGAGGCGCAGGAGCACGGTGCGGGCGCGTTGTTCAGTTTGGCTCTCGATGATGATAACAAAACCGCTATTGGGGTTTTGGGTGGTTTGGCTCCGTTGCTTCACATGCTCCGATCCGAGAGCGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGCTCGGTTCCGGTTCTTTTGAATATGGTTAAGTCGGGTCACATGACGGGTCGAGTTTTGTTAATTTTGGGGAACTTGGGTTCCGGGTCGGACGGGCGGGCCGCAATGTTGGATGCGGGTGTGGTGGAGTGTTTGGTGGGGTTGCTGAGTGGGCCCGAGGCAGGGACCGGGTCGACTCGGGAGAGTTGTGTGGCAGGTGATGTACTCGCTGAGTCACGGCGGGTTGAGGTTTAA 1497 0.5297 MEIQHQQSVKLTVHKRWPSSPKKTPKESEPITPTTPKLKWKKIFFHTKTKTNPKTQTQIQTPPEEFLCPVSRSLMFDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCQSTHTPPPHPTDNNNNNLVPTLISSNPNPVHTLNPSDSPNLVHANPSPEKISDQDLILNSLNENPPLKNLCHHAETEVPIRPTHLYTSSEESIATTSASTPPLQLSTRPSCCYYSSPSSSELEPATTLEEEEITTKLKNPQPSVIEEALLSLRKLTRVKEETRLQLCTPRLLSALRSLVLSKHVNVQVNALASVVNLSLEKSNKVKIVRSGMVPPLIEVLKFGSSEAQEHGAGALFSLALDDDNKTAIGVLGGLAPLLHMLRSESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLNMVKSGHMTGRVLLILGNLGSGSDGRAAMLDAGVVECLVGLLSGPEAGTGSTRESCVAGDVLAESRRVEV 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo60g00006 498 ProSiteProfiles U-box domain profile. 61 135 IPR003613 GO:0004842|GO:0016567
Pumo60g00006 498 Pfam Armadillo/beta-catenin-like repeat 370 409 IPR000225 GO:0005515
Pumo60g00006 498 Coils Coil 274 294 - -
Pumo60g00006 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 138 IPR013083 -
Pumo60g00006 498 FunFam RING-type E3 ubiquitin transferase 15 137 - -
Pumo60g00006 498 SUPERFAMILY ARM repeat 265 474 IPR016024 -
Pumo60g00006 498 Pfam U-box domain 63 131 IPR003613 GO:0004842|GO:0016567
Pumo60g00006 498 MobiDBLite consensus disorder prediction 1 34 - -
Pumo60g00006 498 SMART Ubox_2 65 128 IPR003613 GO:0004842|GO:0016567
Pumo60g00006 498 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 340 382 IPR000225 GO:0005515
Pumo60g00006 498 MobiDBLite consensus disorder prediction 153 174 - -
Pumo60g00006 498 PANTHER U BOX DOMAIN-CONTAINING 55 486 - -
Pumo60g00006 498 SUPERFAMILY RING/U-box 56 134 - -
Pumo60g00006 498 Gene3D - 254 487 IPR011989 -
Pumo60g00006 498 SMART arm_5 450 495 IPR000225 GO:0005515
Pumo60g00006 498 SMART arm_5 329 369 IPR000225 GO:0005515
Pumo60g00006 498 SMART arm_5 411 449 IPR000225 GO:0005515
Pumo60g00006 498 SMART arm_5 288 328 IPR000225 GO:0005515
Pumo60g00006 498 SMART arm_5 370 410 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo60g00006 1 486 U-box Gene Family AT5G40140 51.012 3.73e-141 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo60g00006 - - gmx:100798675 763.451