Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g04001 ATGGCGAAGGGAGGAGAGAAATGCAGTAATGAGTTGTATGCAGTTCTGGGGTTAGACAAGGAGTGTACCCCATCTGAGCTGAAGAATGCCTATAAGAAACTTGCACTGAAATGGCACCCAGATCGTTGTTCAGCGACTCGCGTGGAAGAAGCGAAGAAGAAATTCCAGGCAATCCAGCACGCCTATTCTGTCTTATCTGACGCCAACAAAAGATTCTTGTACGACGTAGGAGTCTATGACAGCGATGACGACCAAACCTCTTGTCTTGTTTCTGGGCTTTCTTATTCCTGGAAAAAACAGGGCATGGGTGACTTCTTGAACGAAATGGCCACAATGATGAGCCAAACAAAACCCAGTGAAAACGGGGAGGAGAGTTTTGAGGAGTTGCAACAGCTCTTTGAAGAAATGTTTCAAGCCAATATTGGGTCAGCGGGAAGCACCTCTCACACTGCACCTGCTTCATCTACATCTACATCTACATCTACGTACATGACTTATGGTGAAAGTTCTAATTCAAACAAACGTAATCCCACTGAAATGAATCTTGGGAAGACAGACAATACATCTGAATTCGATTCCACCTACCAGAACTTCTGTTTAGGGGCAGGTGGAGCACCTCCAAGATACCAAGAAGGGAAAGGGAATAGGGGGAGGAATTCCAGGAGGAGGAGATAG 675 0.4578 MAKGGEKCSNELYAVLGLDKECTPSELKNAYKKLALKWHPDRCSATRVEEAKKKFQAIQHAYSVLSDANKRFLYDVGVYDSDDDQTSCLVSGLSYSWKKQGMGDFLNEMATMMSQTKPSENGEESFEELQQLFEEMFQANIGSAGSTSHTAPASSTSTSTSTYMTYGESSNSNKRNPTEMNLGKTDNTSEFDSTYQNFCLGAGGAPPRYQEGKGNRGRNSRRRR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g04001 224 PANTHER PUTATIVE, EXPRESSED-RELATED 4 196 - -
Pumo5g04001 224 MobiDBLite consensus disorder prediction 143 224 - -
Pumo5g04001 224 Pfam DnaJ domain 12 75 IPR001623 -
Pumo5g04001 224 PRINTS DnaJ domain signature 50 70 IPR001623 -
Pumo5g04001 224 PRINTS DnaJ domain signature 13 31 IPR001623 -
Pumo5g04001 224 PRINTS DnaJ domain signature 31 46 IPR001623 -
Pumo5g04001 224 ProSiteProfiles dnaJ domain profile. 11 78 IPR001623 -
Pumo5g04001 224 Gene3D DnaJ domain 8 149 IPR036869 -
Pumo5g04001 224 SMART dnaj_3 10 70 IPR001623 -
Pumo5g04001 224 CDD DnaJ 11 67 IPR001623 -
Pumo5g04001 224 MobiDBLite consensus disorder prediction 143 196 - -
Pumo5g04001 224 SUPERFAMILY Chaperone J-domain 11 83 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g04001 Pumo-Chr5 90283428 90286795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g04001 13 75 C2H2 Transcription Factor Family AT1G74250 43.939 5.80e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g04001 - - lja:Lj3g3v2576120.1 259.996