Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03997 ATGTGTGGAGGTGCTATTATCTCTGACTTCATTCCGGCGGCGGTGACGGCCGGGTCTCGCCGGCTCACCGCCGATTACCTGTGGCCGGATTTGAAGAAGCGCAAGTCTGACTTGGACGATGACTTCGAGGCTGATTTCAGGGAATTTAAAGACGATTCCGACATCGACTTCGACATCGACGACCACCAAGTCAAGCCCTTTGCTTTCGCCGCCTCTTCCAGGTCTACGGCAGTGAAATCTGTGGCAATCCAAGGTCGAGCTGAGAAATCTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAACGCCCTTGGGGAAAATGGGCAGCTGAGATCCGGGATCCAAGAAAGGGGGTTCGTGTCTGGCTCGGAACCTTCAACACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGAAGCACGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTCCCTGAAGAGGCACCAGGTACTTCTGTAAAACGTTCAAAGGTAAATACACAGGAAAATCTGAAGACTGTTCAGCCCAATCTGAGTCACAAGTTCAGTGCTGGCAACGATCACAAGGACTATTGTTGTCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGTATGCCAACGTGGCTTCCTTCCCTGGCAGTGGAAATGGGCTCACATCTCTTCCTTCCTCTGATGATGTGACCCTTTACTTCAGTTCAGATCAGGGGAGTAATTCATTTGATTATGCAGATCTTGGGTGGAGTGAACAGGGCCCCAAAACTCCTGAGATCTCATCCATGCTTTCTGCTCCTTTGGATTGTGAATCTCATTTTGTGCAAGATGCCAACCAGCAGAACAACATGCAGCCTAACTCTCAGAATGTGGTATCTATGGAAGATGATTCTGCTAAGACCCTCTCTGAGGAGCTTGTGGATATTGAATCTGAGTTGAAGTTCTTTCAGATGCCCTATCTGGAAGGGAGCTGGGGCGATACTTCATTGGAATCCTTGCTATCTGGTGACACAACTCAGGATGGTGGAAACCTGATGAACCTTTGGAGCTTTGATGACATTCCTTCCATGGCTGGCGGAGTTTTCTGA 1095 0.4895 MCGGAIISDFIPAAVTAGSRRLTADYLWPDLKKRKSDLDDDFEADFREFKDDSDIDFDIDDHQVKPFAFAASSRSTAVKSVAIQGRAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEEAPGTSVKRSKVNTQENLKTVQPNLSHKFSAGNDHKDYCCPMDLVEQKPLVNQYANVASFPGSGNGLTSLPSSDDVTLYFSSDQGSNSFDYADLGWSEQGPKTPEISSMLSAPLDCESHFVQDANQQNNMQPNSQNVVSMEDDSAKTLSEELVDIESELKFFQMPYLEGSWGDTSLESLLSGDTTQDGGNLMNLWSFDDIPSMAGGVF 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03997 364 ProSiteProfiles AP2/ERF domain profile. 98 155 IPR001471 GO:0003700|GO:0006355
Pumo5g03997 364 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Pumo5g03997 364 Gene3D AP2/ERF domain 97 156 IPR036955 GO:0003700|GO:0006355
Pumo5g03997 364 CDD AP2 98 156 IPR001471 GO:0003700|GO:0006355
Pumo5g03997 364 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Pumo5g03997 364 PRINTS Ethylene responsive element binding protein signature 99 110 IPR001471 GO:0003700|GO:0006355
Pumo5g03997 364 FunFam Ethylene-responsive transcription factor 2 97 156 - -
Pumo5g03997 364 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Pumo5g03997 364 SMART rav1_2 98 161 IPR001471 GO:0003700|GO:0006355
Pumo5g03997 364 PANTHER DNA-BINDING DOMAIN 76 306 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03997 Pumo-Chr5 90264905 90267567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03997 1 364 AP2-EREBP Transcription Factor Family AT3G14230 46.229 8.57e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo5g03997 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03997 K09286 - gmx:100170723 583.178