Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03993 ATGACCACAATTTCCAAGAACAAAGTCTTGTTGCTGGCTCTCTGTGCTACTCTCCTTCTCTTGGTCGGCGGTGACAATGGCTCCTCCTCCCCATCCGACGGCATCATCAAAAGCGCCTGCAGCAGCACCTTATACCCGGAATTGTGCTTCTCAACCATAGCATTAGCCTCTGAGAAAGTTTCAAGTCACAAAAATGTGATAGAGCAGTCCTTGAACATAACCACGGGAATCGTTCAGCGGAATTACTTCACAGTGGAGAAGCTCTTACACCAAAAGGGAAAGGGACTGACACTGACACTGACCAAGAGGCAGAAAACGGCCCTCCACGATTGCTTGGAAACCATTGACGAGACTCTGGACGAGCTTCACAAGGCCATGGATGACCTCAAAAAGTCAAAGTCTCTTTCTCAGCACGCCGACGATCTCAAAACTCTGATGAGTTCGGCCATAACCAACCAAGAGACTTGCCTCGATGGTTTCTCTCACGACGAGGCTGACAAAAAACTCAGGAAACATCTGGAGGCAGGGCTAGTGCACGTGGAGCACTTGTGCAGCAACGCATTGGCTATGACAAAGAATCTCACTGACAATGACATGGTCCGCAGGAAAATGATGGAGACTGATGATGGGATCAAGTGGCCGGAGTGGATTTCCGCCGCGGACAGGCATCTTCTGCAGGCGGGTACGGTGAATCCGGACGTGGTGGTGGCGGCGGACGGCAGCGGGGACTTCAGGACGGTGTCGGCTGCGGTGGCTGCGGCTCCTCAGAAGAGTAGCAAGAGATATGTTATTAAGATCAAAGCTGGAGTGTACAGAGAGAATGTGGATGTGCCCAAGAAGAAGACTAACATTATGTTCCTCGGGGATGGCAGAACTAACACCATCATCACTGCAAGTAGAAATGTCGTTGATGGCAGCACCACCTTTAACTCTGCCACAGTAGCCGTAGTGGGTGAACGATTCTTGGCTCGAGACATAACCTTCGAGAACACAGCTGGTCCCTCGAAGCACCAAGCAGTTGCCCTCAGAGTTGGGGCTGACCTCTCAGCATTCTACATGTGCGACTTCCTTGCATACCAAGACACCCTTTACGTCCACAGCAATCGCCAATTCTTTGTCAACTGCTACATAGCAGGCACAGTGGACTTCATCTTTGGCAACTCAGCTGCTGTCATCCAAAACTCTGACATCAACGCCAGGCGTCCCAATCCAGGCCAAAAGAACATGGTCACTGCACAAGGCCGCGTTGACCCCAACCAAAACACAGGCATTGTCATCCAAAACTGTAGGATTGCTGCCACCAAGGACTTGGAATCTGTCAAAACCAGCTTCCCTACTTTTCTTGGGAGGCCCTGGAAGGAGTACTCTCGTACTGTTATCATGCAATCAACCATAAGTGATGTCATTGACCCTGCTGGTTGGCATGAGTGGAATGGCAACTTTGCCTTGAATACCTTGTTCTATGGGGAGTATCACAACACTGGGCCTGGTGCTGACACCTCTCAGAGGGTTAATTGGAAAGGGTTTAAGGTCATTACAACTGCTACTGAGGCCCAAACTTTTACTCCCGGCAATTTCATTGCAGGTTCAAGCTGGTTGGGCCTCTACTGGATTTCCATTCTCTCTTGGCCTCTAAGTTATATGTTGAGTTTCCATCTACTCTTGCAATGCTATTCAGCATTTCTTGTTTTTTCTTAA 1698 0.4959 MTTISKNKVLLLALCATLLLLVGGDNGSSSPSDGIIKSACSSTLYPELCFSTIALASEKVSSHKNVIEQSLNITTGIVQRNYFTVEKLLHQKGKGLTLTLTKRQKTALHDCLETIDETLDELHKAMDDLKKSKSLSQHADDLKTLMSSAITNQETCLDGFSHDEADKKLRKHLEAGLVHVEHLCSNALAMTKNLTDNDMVRRKMMETDDGIKWPEWISAADRHLLQAGTVNPDVVVAADGSGDFRTVSAAVAAAPQKSSKRYVIKIKAGVYRENVDVPKKKTNIMFLGDGRTNTIITASRNVVDGSTTFNSATVAVVGERFLARDITFENTAGPSKHQAVALRVGADLSAFYMCDFLAYQDTLYVHSNRQFFVNCYIAGTVDFIFGNSAAVIQNSDINARRPNPGQKNMVTAQGRVDPNQNTGIVIQNCRIAATKDLESVKTSFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWHEWNGNFALNTLFYGEYHNTGPGADTSQRVNWKGFKVITTATEAQTFTPGNFIAGSSWLGLYWISILSWPLSYMLSFHLLLQCYSAFLVFS 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03993 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 196 IPR035513 -
Pumo5g03993 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 34 195 IPR035513 -
Pumo5g03993 565 Pfam Pectinesterase 233 529 IPR000070 GO:0030599|GO:0042545
Pumo5g03993 565 NCBIfam pectinesterase inhibitor domain 11 195 IPR006501 GO:0004857
Pumo5g03993 565 Gene3D - 227 538 IPR012334 -
Pumo5g03993 565 SUPERFAMILY Pectin lyase-like 230 539 IPR011050 -
Pumo5g03993 565 Coils Coil 112 132 - -
Pumo5g03993 565 CDD PMEI-like_3 38 195 - -
Pumo5g03993 565 Pfam Plant invertase/pectin methylesterase inhibitor 35 190 IPR006501 GO:0004857
Pumo5g03993 565 SMART PMEI_2 31 190 IPR006501 GO:0004857
Pumo5g03993 565 FunFam Pectinesterase 227 542 - -
Pumo5g03993 565 PANTHER PECTINESTERASE 17 534 - -
Pumo5g03993 565 FunFam Pectinesterase 32 195 - -
Pumo5g03993 565 ProSitePatterns Pectinesterase signature 2. 377 386 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03993 Pumo-Chr5 90210585 90217477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03993 29 533 Carbohydrate Esterase AT1G53830 69.260 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03993 K01051 - jre:109013060 760.755