Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03988 ATGGGTGACTCGTCCGCGCCAAATGATCGTTTGGGTGAATCCCCGGCCGTTGAGTTAACCGGAAAGATAATGATTGTGGTTATAATAATCATGTTCTTCGTTATTGTAATTGCCCTCTGCCTTCATCTCTTCACCAGAAACTTCTGGTGGCGCAGCCCTGCTCCCCAATCTCGCCGCCGCCGCCGCTTTGTGTTTTCCTCCGGTCAAGACGGTGGTGCTCTTCGAACCGGACTCGATCCTGCGGTTCTCAGCTCCCTTCCCGTGTTGGTATTCCAAGCCCAAGACTTCAAGGATGGCTTGGAATGTGCGGTTTGCCTCTCCGAGGTTGTGGAAGGAGAAAAGGCGAGGCTTTTGCCTAAGTGCAATCATGGGTTTCACGTTGGTTGTATTGACATGTGGTTCCAATCCCATTCTACTTGCCCTCTTTGTAGGAACCCTGTTGCCTCCTCAGAATCAGAATCTGAATCTCCCACTTTTCCCACCAACGTCTTGGTTTGGGGGGACAATACCCAAATAAGTTCTACTACCAGTGGTGGTGCTGCTTCTTTGGAGGAAGGTGCTGCTTCTCAGCCACCTTCCTCCTCATCCTCTTCCGCTGCTACTTGTGATGATCATAATCATAATAATAATAATAATAGACGTCATGGAACGTTGGTGATTGATATACCAAGTGATATCACTTCAACCTCTGCAAGCAGGTTTGCTGAAGATGACCTCAAATCCCCTATGACCGGAAGATTGAGGTCATTGAAGAGGCTTTTGAGCAGGGACACAAGGTTAAATCCTTGGAGTCCTACTTCTCTTGATGTAGAACAACCAGCCTCAGCCTCAGCCTCAGCCTCAGGGGGAGGACACACCTGA 861 0.4925 MGDSSAPNDRLGESPAVELTGKIMIVVIIIMFFVIVIALCLHLFTRNFWWRSPAPQSRRRRRFVFSSGQDGGALRTGLDPAVLSSLPVLVFQAQDFKDGLECAVCLSEVVEGEKARLLPKCNHGFHVGCIDMWFQSHSTCPLCRNPVASSESESESPTFPTNVLVWGDNTQISSTTSGGAASLEEGAASQPPSSSSSSAATCDDHNHNNNNNRRHGTLVIDIPSDITSTSASRFAEDDLKSPMTGRLRSLKRLLSRDTRLNPWSPTSLDVEQPASASASASGGGHT 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03988 286 MobiDBLite consensus disorder prediction 254 286 - -
Pumo5g03988 286 SMART ring_2 102 143 IPR001841 -
Pumo5g03988 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 21 161 - -
Pumo5g03988 286 MobiDBLite consensus disorder prediction 259 286 - -
Pumo5g03988 286 Pfam Ring finger domain 101 144 IPR001841 -
Pumo5g03988 286 SUPERFAMILY RING/U-box 82 150 - -
Pumo5g03988 286 CDD RING-H2_EL5-like 101 144 - -
Pumo5g03988 286 MobiDBLite consensus disorder prediction 145 164 - -
Pumo5g03988 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 155 IPR013083 -
Pumo5g03988 286 FunFam RING-H2 finger protein ATL3 69 149 - -
Pumo5g03988 286 MobiDBLite consensus disorder prediction 175 223 - -
Pumo5g03988 286 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03988 Pumo-Chr5 90189829 90191248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03988 18 261 C3H Transcription Factor Family AT1G53820 41.137 6.23e-63 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03988 - - gmx:100797420 349.747