Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03987 ATGGGAAGAAGAAAGGCACTAGAAGAAACCCTTCGTGGTCGAGTGGAGGCAATGTACCCTGCTCATGCTCCCGACGAAATTGTGAAGCATCTTCGTTCAACCTATCCTGATTACCACCGAATGAAGCACAAAACTCTCATTCGATTTGTTCAGGAAGCTCTTCGATCTCACGACTGTCGAAAGAAACGGAAGAAAATTGGCGAAGAAGGTCAAGAGAGACCATTCACCTCGTGGGAGAGTGACGGAGATAACGGCACTCGATCGGAACTTTCTTATGACTTGACCAAGACAATGCTAAGGAATTCCTATATGGCCAATAGTATTGTGAATGAGTTGGCGAATGTGACAATGTTTAGGGATTTGGGTGGGATAAAGAAGGTTAAGGAGGAAGTGAATAGGATGCTGTTGCCCATCTATCATCCCCATCTCGCTAGAGAGTTGGGAGTGAGGCCAACATCTGGCATTTTGTTGCATGGACCTCCTGGCTGTGGCAAGACTAGGCTCGCTCACGCTATAGCTAATGAAACTCGACTCCCTTTCTATCCCATTTCACCCGGCCAACTCGTCTCAGCCTCAGGTGATTCTGAACAGAATATTAGAGACCTTTTCTCTAAAGCATACACTACTGCTCCATCAATTATCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAAGATTTAACTCGCCAGACGGAGAAACGAATTGTCACACAGTTATTGACATGCATGGATCAACCACATTATCACAACTACGTTCTTGTCATTGGAGCTACAAATAGGCCACATGACATTGACCCTGCCCTTAGAAGGCCTGGGAGATTTGCTCGTGAGATTTTTATTGGCTATCCTGATGATTCTTCCAGGGACGAGATCCTTTCTGTTCTTACTCGCAATGTTAAACTTGACCCTCAGGTTGATCTACCAAAGATAGCAAAATCTACACCAGCATTTTCTGCCTCTGATTTGCAAGCTGTGCTTTCTCAGGCTGGTGAGCTGGCAATGGAGAGAATTGTTCGTCAAAGGAATATCATGAGAGACTGTCCAGAAGACAATGTGAAAGAACCCTTGTCGCAAGAACAACTGGATAAGGCTGCCATCAAAATGTCTGATTTGGAGGAAGCAGTTAAACTGGTGCAACCTTCAGCAAGAAGAGAAGGGTTCCATCCCATTCCTGATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTCTTACGGCAGGAGTTTGATGACTATATCATAAGTCCTATAAAATATCCTGAGGATTATGAGGGATTTGGGGTGGATCTTAAGACGGGATTTTTGCTTTACGGACCTCCAGGTTGTGGTAAAACACTGATTGCCAAAGCTGTTGCCAATGCTGCAGGAGCTAGTTACATTCATATTAAGGGACCTGAACTTCTAAATCGATATGTTGGAGAAAGTGAGAGCGAAGTTCGGAAAATATTTAATCAAGCAAGGACATGTGCACCTTGTATACTGTTTTTTGATGAGTTGGATGCATTGACAACCAAACGTGGTAAAGAAGGTGGGTGGGTTACTGAGCGACTATTGAACCAGTTGCTTATTGAGTTAGATGGTGGAGCGGGACGGAGAGGTGTTTTTGTGATTGGAGCAACAAATAGGCCTGATGTGATTGATCCTGCTCTTTTACGGCCTGGCCGGCTTGGTAGACTTGTTTACATTCCCCTCCCAATTCCAGACGAGCGGGTTTTGATATTGAAAGCTCTTGCCAGAAAATATCGTGTAGATGCCAGTACGGATCTGAGTGCCATAGGAAGATCAGAAGCTTGTGAAAACATGAGTGGTGCTGATGTTGCTTTTTTGATGAACGAAGCAGCAATGGCTGCTAGGAAAGAGAAGACGGCCTCAACTGATACAACTTCTTGTGATACATCGACCATCAAGCCACGTCATTTTGAAGTAGCATTTAGTAGAGTCTTTCCCTCCGTGTCTGACAAGCAAAAGCAGTACTACGAGCATTTGTCAGAGAGGTTTAGCCCTTCCTTTCACAGAAATATAAAGGAAAGAAATGGGAGAGAGAGAAAAAAAAGTGAAGGAAATCAATCCTTTGGGCAAGAATGGAAAAGGGGGAGGAAGGAGAAACAGTAG 2115 0.4411 MGRRKALEETLRGRVEAMYPAHAPDEIVKHLRSTYPDYHRMKHKTLIRFVQEALRSHDCRKKRKKIGEEGQERPFTSWESDGDNGTRSELSYDLTKTMLRNSYMANSIVNELANVTMFRDLGGIKKVKEEVNRMLLPIYHPHLARELGVRPTSGILLHGPPGCGKTRLAHAIANETRLPFYPISPGQLVSASGDSEQNIRDLFSKAYTTAPSIIFIDEIDAIASKREDLTRQTEKRIVTQLLTCMDQPHYHNYVLVIGATNRPHDIDPALRRPGRFAREIFIGYPDDSSRDEILSVLTRNVKLDPQVDLPKIAKSTPAFSASDLQAVLSQAGELAMERIVRQRNIMRDCPEDNVKEPLSQEQLDKAAIKMSDLEEAVKLVQPSARREGFHPIPDVKWEDVGGLDLLRQEFDDYIISPIKYPEDYEGFGVDLKTGFLLYGPPGCGKTLIAKAVANAAGASYIHIKGPELLNRYVGESESEVRKIFNQARTCAPCILFFDELDALTTKRGKEGGWVTERLLNQLLIELDGGAGRRGVFVIGATNRPDVIDPALLRPGRLGRLVYIPLPIPDERVLILKALARKYRVDASTDLSAIGRSEACENMSGADVAFLMNEAAMAARKEKTASTDTTSCDTSTIKPRHFEVAFSRVFPSVSDKQKQYYEHLSERFSPSFHRNIKERNGRERKKSEGNQSFGQEWKRGRKEKQ 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03987 704 ProSitePatterns AAA-protein family signature. 254 272 IPR003960 GO:0005524|GO:0016887
Pumo5g03987 704 MobiDBLite consensus disorder prediction 61 87 - -
Pumo5g03987 704 Pfam AAA+ lid domain 307 345 IPR041569 -
Pumo5g03987 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 666 IPR027417 -
Pumo5g03987 704 SMART AAA_5 431 568 IPR003593 GO:0016887
Pumo5g03987 704 SMART AAA_5 151 286 IPR003593 GO:0016887
Pumo5g03987 704 MobiDBLite consensus disorder prediction 670 704 - -
Pumo5g03987 704 Gene3D - 566 646 - -
Pumo5g03987 704 FunFam Ribosome biogenesis ATPase RIX7 106 283 - -
Pumo5g03987 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 378 IPR027417 -
Pumo5g03987 704 Pfam ATPase family associated with various cellular activities (AAA) 436 564 IPR003959 GO:0005524|GO:0016887
Pumo5g03987 704 Pfam ATPase family associated with various cellular activities (AAA) 155 283 IPR003959 GO:0005524|GO:0016887
Pumo5g03987 704 MobiDBLite consensus disorder prediction 61 76 - -
Pumo5g03987 704 Gene3D - 393 661 IPR027417 -
Pumo5g03987 704 ProSitePatterns AAA-protein family signature. 535 553 IPR003960 GO:0005524|GO:0016887
Pumo5g03987 704 Gene3D - 99 283 IPR027417 -
Pumo5g03987 704 Gene3D - 285 387 - -
Pumo5g03987 704 PANTHER AAA-FAMILY ATPASE 311 668 - -
Pumo5g03987 704 FunFam ATPase, AAA family protein 393 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03987 Pumo-Chr5 90170829 90175753 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03987 121 672 Calmodulin-binding Proteins AT3G56690 34.202 1.53e-103 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03987 K14571 - gmx:100809594 796.964