Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03983 ATGGCAAGTGAACACGAAGAGGATTTGAAGAATCCCCGCCCCCTCGACGAAGATGATATCGCCCTCCTCAAAACCTATGGTTTGGGCCCTTATTCCACAAGCATAAAGAAAGTCGAGAAGGAAATAAAAGACATGGCAAAAAAGGTCAATGATTTATGTGGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCACGGTGCACAAAGATCATAAATCCAAATTCAGAAGATGCCAAATATGTTATCAACGTGAAGCAGATTGCAAAGTTTGTTGTTGGACTGGGTGACAAAGTTTCACCCACTGACATAGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAAATTCCACTGCCTCCAAAAATTGATCCAAGTGTTACCATGATGACAGTTGAAGAGAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTCCACCCAGAGAAATTTGTTAAGCTAGGAATTGATCCTCCAAAAGGTGTTCTTTGCTATGGTCCACCAGGGACTGGTAAAACACTTTTAGCCAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATAAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTTGATGAAGTTGATGCAATTGGGGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCCCGTGGAAACATCAAAGTCTTGATGGCAACAAACAGGCCTGACACTCTAGATCCAGCACTACTACGGCCTGGACGATTGGACCGTAAAGTGGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAATTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACTGGAGCTGATATAAGGAGCGTTTGCACTGAAGCTGGTATGTATGCTATTCGAGCCCGAAGGAAGACTGTGACAGAGAAAGACTTCCTTGATGCAGTTAATAAAGTCATCAAAGGATATCAGAAGTTCAGTGCAACTCCCAAGTATATGGTCTACAATTGA 1272 0.4332 MASEHEEDLKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03983 423 ProSitePatterns AAA-protein family signature. 305 323 IPR003960 GO:0005524|GO:0016887
Pumo5g03983 423 Gene3D - 155 334 IPR027417 -
Pumo5g03983 423 Pfam ATPase family associated with various cellular activities (AAA) 202 334 IPR003959 GO:0005524|GO:0016887
Pumo5g03983 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 413 IPR027417 -
Pumo5g03983 423 FunFam 26S protease regulatory subunit 7 336 407 - -
Pumo5g03983 423 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 5 409 - -
Pumo5g03983 423 CDD RecA-like_PAN_like 163 333 - -
Pumo5g03983 423 FunFam 26S protease regulatory subunit 7 155 334 - -
Pumo5g03983 423 Gene3D - 336 417 - -
Pumo5g03983 423 FunFam 26S protease regulatory subunit 7 30 154 - -
Pumo5g03983 423 Gene3D - 27 154 IPR012340 -
Pumo5g03983 423 SMART AAA_5 198 337 IPR003593 GO:0016887
Pumo5g03983 423 Pfam AAA+ lid domain 357 400 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03983 Pumo-Chr5 90146680 90150846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03983 167 388 Calmodulin-binding Proteins AT3G56690 37.220 1.51e-41 155