Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03979 ATGACACAGGGAACTCCCAGACAAAGACCAACCACATCAACACGACCCTCTTCCATGTACATGGTTTCCAAGTTGATGGTCCTGTTCCTTCTGTCTGGATTCCTTGTTCTTGTTCAAGCCTCCTCGTGTAACCAACTGGATAGAGACTCGCTCTTGGCCTTCTCCAGCAACATATCCTCGCCTTCCCCTCTCAATTGGTCTCCTTCTGTTGATTGCTGTTTGTGGGAAGGCATTGTGTGTGATGAGGATCTCAGAGTCATACATCTATTGCTACCATCCAGGGCTCTCTCTGGCTTCATCTTCCCATCTCTCACAAACCTCACTGCTCTCTCCCGCCTTAATCTCTCCCATAACCGCTTTTCTGGTAATCTCCCCAACCAATTCTTCTCACTTCTTAATCACCTCCACATTCTTGATTTAAGCTTCAATCGTCTCTCTGGTCAATTGCCACCCTTTCTTCCTAATATCACTGCCAATACCAATACTATCCGGGAGATCGATTTGTCTAGTAATTTATTCCACGGAACACTCCCACCTTCTCTCCTTCAGCACCTGGCAGATGCAGCTGCACGAGGGAGTTTGACATCTTTTAATGTTAGTAACAATAGCTTCACAGGTCAAATTCCCACTTCTCTCTGCTCCTCTTCTCTCAGATTCTTGGATTATTCCTCCAATGATTTCACAGGCACCATTCAGCCTGGACTAGGAGCATGTTCCAAGCTGGAGAGATTTCGAGCAGGTTCCAATTCACTATCCGGGCCCCTTCCTGCTGATATTTTTAATGCTTTTGCTCTCACAGAAATCTCCCTGCCCCTCAATAAACTCAATGGAACCATTGGTGAGGGCATTGTTAACCTTGCCAACCTCACAGTTTTGGAGCTCTACTCCAATAATTTCACGGGGCCTATTCCCTCGGATATTGGTAAGCTCTCCAAATTGGAACGTTTACTCCTTCATGCCAACAATATAACTGGTACTCTGCCCCCATCTCTGATGGACTGTGTCAATCTTGTCATGTTGGATGTAAGGCTCAACTTGTTGGAGGGAAACCTGTCAGCATTGAATTTCTCCGGACTCCTCAGACTCACAGCACTTGACCTCGGCAACAATAGCTTTACTGGTATTTTACCACCATCCCTTTATGCCTGTAAGTCACTTAAAGCAGTAAGGCTAGCATCTAATCATTTTGAGGGACAGATCTCACCTGACATACTTGGACTTCAGTCTCTGGCTTTCCTATCAATTTCTACCAACCACCTGAGTAATGTCACTGGGGCTCTCAAGTTACTCATGGAACTCAAGAACCTCAGTACCCTTATGCTCTCCCAGAATTTTTTCAATGAAATGATGCCAGATGATGCAAACATAACAAATCCAGATGGATTCCAAAAGATCCAAGTTCTAGCATTGGGTGGCTGTAATTTCACAGGCCAAATACCACGCTGGCTTTTTAATCTGAAGAAGCTCGAGGTCTTGGATTTGTCCTATAATCAAATTAGTGGTTCAATTCCTCCTTGGTTGTACACACTTCCTGAGCTTTTCTACATAGACTTGTCTTTTAACCGCCTCACAGGAATATTTCCAATTGAGCTCACAAGGCTTCCAGCACTAACATCACAACAGGCATATGATGAAGTAGAAAGGACTTACCTGGAGTTACCTGTCTTTGCTAATGCCAACAATGTTTCTCAGATGCAATATAATCAGATTTCCAACCTACCACCAGCAATATATCTGGGAAACAATAGCCTCAATGGCAGTATCCCTATAGAGATTGGCAAACTGAAAGTCCTTCATCAGCTGGACCTTAGCAACAACAAATTCTCTGGCAATATCCCAGCAGAAATTTCTAACTTGATTAACTTAGAGAAACTATATCTCTCAGGAAACCAACTTTCTGGTGAAATTCCTGTTTCACTCAAAAGCTTGCATTTTTTGTCTGCTTTCAGTGTAGCATACAATAATCTTCAAGGACCGATACCAACTGGTGGTCAATTTGATACTTTCTCCTCTTCCAGCTTTGAAGGAAACCCACAGTTGTGCGGTTCAGTTGTTCAGCGCTCTTGTCTTCCTCAACAGGGTACTACTGCACGTGGTCACAGTTCAAACAAAAAATTGATAATTGGATTTTCCATTGCAGCCTGTTTTGGCACTATTTCCTTCATTTCAGTGTTGATAGTGTGGATAATATCCAAGAGGAGGATCAATCCAGGTGGAGACGCTGACAAGATTGAACTAGAATCAATTTCTGTCAGCTCTTACAGTGGGGTTCATCCTGAGGTTGACAAAGAGGCTAGCCTAGTGGTATTGTTCCCTAATAAAACAAATGAAATCAAGGACCTTACCATATTTGAAATATTAAAAGCCACTGAAAATTTCAGTCAGGCAAACATAATAGGATGTGGGGGTTTTGGTTTGGTTTATAAAGCAACGTTACCAAATGGAACTACACTGGCCATCAAGAAACTTTCAGGAGATTTGGGCCTTATGGAAAGGGAGTTTAGAGCAGAGGTAGAGGCTTTGTCGACAGCACAGCATGAAAATCTGGTTGCATTGCAAGGCTATTGTGTGCATGAGGGTGTTCGGCTTCTCATATATACTTACATGGAAAATGGAAGTCTGGATTACTGGTTGCATGAAAAGGCCGATGGTCCATCTCAACTTAGATTGGCCTACTCGACTGAAGATTGCACAAGGTGCAAGTTGTGGATTGGCTTACATGCATCAGATATGTGA 2736 0.4327 MTQGTPRQRPTTSTRPSSMYMVSKLMVLFLLSGFLVLVQASSCNQLDRDSLLAFSSNISSPSPLNWSPSVDCCLWEGIVCDEDLRVIHLLLPSRALSGFIFPSLTNLTALSRLNLSHNRFSGNLPNQFFSLLNHLHILDLSFNRLSGQLPPFLPNITANTNTIREIDLSSNLFHGTLPPSLLQHLADAAARGSLTSFNVSNNSFTGQIPTSLCSSSLRFLDYSSNDFTGTIQPGLGACSKLERFRAGSNSLSGPLPADIFNAFALTEISLPLNKLNGTIGEGIVNLANLTVLELYSNNFTGPIPSDIGKLSKLERLLLHANNITGTLPPSLMDCVNLVMLDVRLNLLEGNLSALNFSGLLRLTALDLGNNSFTGILPPSLYACKSLKAVRLASNHFEGQISPDILGLQSLAFLSISTNHLSNVTGALKLLMELKNLSTLMLSQNFFNEMMPDDANITNPDGFQKIQVLALGGCNFTGQIPRWLFNLKKLEVLDLSYNQISGSIPPWLYTLPELFYIDLSFNRLTGIFPIELTRLPALTSQQAYDEVERTYLELPVFANANNVSQMQYNQISNLPPAIYLGNNSLNGSIPIEIGKLKVLHQLDLSNNKFSGNIPAEISNLINLEKLYLSGNQLSGEIPVSLKSLHFLSAFSVAYNNLQGPIPTGGQFDTFSSSSFEGNPQLCGSVVQRSCLPQQGTTARGHSSNKKLIIGFSIAACFGTISFISVLIVWIISKRRINPGGDADKIELESISVSSYSGVHPEVDKEASLVVLFPNKTNEIKDLTIFEILKATENFSQANIIGCGGFGLVYKATLPNGTTLAIKKLSGDLGLMEREFRAEVEALSTAQHENLVALQGYCVHEGVRLLIYTYMENGSLDYWLHEKADGPSQLRLAYSTEDCTRCKLWIGLHASDM 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03979 911 SUPERFAMILY L domain-like 193 539 - -
Pumo5g03979 911 Gene3D Ribonuclease Inhibitor 261 354 IPR032675 -
Pumo5g03979 911 Gene3D Ribonuclease Inhibitor 355 696 IPR032675 -
Pumo5g03979 911 ProSiteProfiles Leucine-rich repeat profile. 488 511 IPR001611 GO:0005515
Pumo5g03979 911 Pfam Leucine rich repeat 464 523 IPR001611 GO:0005515
Pumo5g03979 911 Pfam Leucine rich repeat N-terminal domain 47 81 IPR013210 -
Pumo5g03979 911 ProSiteProfiles Leucine-rich repeat profile. 621 643 IPR001611 GO:0005515
Pumo5g03979 911 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 881 - -
Pumo5g03979 911 SUPERFAMILY Protein kinase-like (PK-like) 777 882 IPR011009 -
Pumo5g03979 911 Gene3D Ribonuclease Inhibitor 188 260 IPR032675 -
Pumo5g03979 911 SMART LRR_typ_2 310 334 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 407 429 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 132 156 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 107 131 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 595 618 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 433 455 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 359 383 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 619 643 IPR003591 -
Pumo5g03979 911 SMART LRR_typ_2 486 510 IPR003591 -
Pumo5g03979 911 Pfam Leucine Rich Repeat 621 643 IPR001611 GO:0005515
Pumo5g03979 911 Pfam Leucine Rich Repeat 361 381 IPR001611 GO:0005515
Pumo5g03979 911 FunFam Leucine-rich repeat receptor protein kinase MSP1 760 868 - -
Pumo5g03979 911 Gene3D Ribonuclease Inhibitor 44 187 IPR032675 -
Pumo5g03979 911 Gene3D Phosphorylase Kinase; domain 1 757 868 - -
Pumo5g03979 911 SUPERFAMILY L domain-like 463 684 - -
Pumo5g03979 911 PRINTS Leucine-rich repeat signature 135 148 - -
Pumo5g03979 911 PRINTS Leucine-rich repeat signature 486 499 - -
Pumo5g03979 911 ProSiteProfiles Protein kinase domain profile. 793 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03979 911 FunFam Receptor-like protein 2 45 159 - -
Pumo5g03979 911 ProSitePatterns Protein kinases ATP-binding region signature. 799 822 IPR017441 GO:0005524
Pumo5g03979 911 FunFam Tyrosine-sulfated glycopeptide receptor 1 356 694 - -
Pumo5g03979 911 SUPERFAMILY L domain-like 43 278 - -
Pumo5g03979 911 Pfam Protein tyrosine and serine/threonine kinase 796 883 IPR001245 GO:0004672|GO:0006468
Pumo5g03979 911 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 256 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03979 Pumo-Chr5 90092587 90095430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03979 9 733 Miscellaneous Gene Families AT1G17250 50.872 0.0 655
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Pumo5g03979 PK_Tyr_Ser-Thr 2.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03979 - - gmx:100782574 1612.82