Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03975 ATGCACAATGAATCTGTAGATGCCACTAACAATTCACCCACTTACCATGAATTAGGGTTACACCAGCAAGATGCAGCATCAAATTTTGGAAAGAAGCTAGACTTGATGGACTTGTCACTAGGGAGCAACAAGGAAGAGGAAGAAGAAGGGAATTTGCAACAAGGAGGAGGAGGAGTGGTTCATCATCATCATCATCATCCTCATGATGCGCATGCCACTTGTTCAACGACCACGAAGGAAGTAGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTAGGGAAGCTGAACAGGCTGGTCATACCGAAGCAGCACGCAGAGAAGTACTTCCCCCTTGATTCCTCATCGAACGAGAAGGGTCTGCTCCTGAATTTTGAGGACCGGAATGGGAAAGTGTGGCGGTTCAGGTATTCGTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTCGTGAAGGAGAAGAAGCTGGATGCAGGTGACATTGTCTCCTTCCAGCGTGGCCTTGGCGATTTGTATAGACATAGTTTGTACATAGATTGGAGGAGAAGGACTGATCATGCTCATCCTCATGCCCCTGATCCTTCACACTCCCCTTTGTTTCTTCCCTCTATCAGATGGTACTCTCTCCCTCCCACCATGCCAATGCCACCTCGCTACCACCACGATCATCACTTTCACCATCTCAATTACAACAACCTCTTCACTTTTCAGCAACAACACCAGTACCTTGGTGCTGCCACTGCTTCTCATCATCATCACAACAACTATGGTGAGCAGAATTCGGGATCTGGGTCACTCTATTACCTCAGGTCCTCCATGTCAATGGGTGGTGGTGATCAAAACTCGCAAGGGAGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTGCCGGTTAACGTTGCCCATCACAACAATCGCCATGGACATGGGGGCATCACGAGTGGTGGTGGTGGTGGAAAACGACTAAGGCTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGAAGATTCCAAAGGCTTGCAGTCCTCGGGTTCGGCAGCACATGTGACGACACTTGGTAATTCACTTCCCTCATCTTCTTCTTCTCTTCAGCGCTTGAGGCTGCCACATGAAGACCCACTTTCGTCGTCGTCATCAAGGTTTGGGGATCACAAAGGGACTTCGCTGCTGTTTGATTTGGATCCTTCTTTGCAGTATCATCGGCAGTGA 1242 0.4879 MHNESVDATNNSPTYHELGLHQQDAASNFGKKLDLMDLSLGSNKEEEEEGNLQQGGGGVVHHHHHHPHDAHATCSTTTKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHSLYIDWRRRTDHAHPHAPDPSHSPLFLPSIRWYSLPPTMPMPPRYHHDHHFHHLNYNNLFTFQQQHQYLGAATASHHHHNNYGEQNSGSGSLYYLRSSMSMGGGDQNSQGRGNNIVPMIIDSVPVNVAHHNNRHGHGGITSGGGGGKRLRLFGVNMECASSAEDSKGLQSSGSAAHVTTLGNSLPSSSSSLQRLRLPHEDPLSSSSSRFGDHKGTSLLFDLDPSLQYHRQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03975 413 FunFam B3 domain-containing protein 81 201 - -
Pumo5g03975 413 Pfam B3 DNA binding domain 88 192 IPR003340 GO:0003677
Pumo5g03975 413 SUPERFAMILY DNA-binding pseudobarrel domain 85 176 IPR015300 -
Pumo5g03975 413 SMART B3_2 88 193 IPR003340 GO:0003677
Pumo5g03975 413 MobiDBLite consensus disorder prediction 43 73 - -
Pumo5g03975 413 MobiDBLite consensus disorder prediction 347 395 - -
Pumo5g03975 413 Gene3D - 81 201 IPR015300 -
Pumo5g03975 413 CDD B3_DNA 86 175 IPR003340 GO:0003677
Pumo5g03975 413 ProSiteProfiles B3 DNA-binding domain profile. 88 193 IPR003340 GO:0003677
Pumo5g03975 413 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 350 IPR044800 GO:0003700
Pumo5g03975 413 MobiDBLite consensus disorder prediction 347 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03975 Pumo-Chr5 90029925 90031625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03975 35 405 RAV Transcription Factor Family AT2G46870 46.277 5.26e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pumo5g03975 B3 4.7e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03975 K09287 - gmx:100812161 527.709