Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03974 ATGGAGGATGGGAGTAGGGTTCCGGCGGCGGCGGTGGGGGATGACCCCTCTTACTGGCTGGATGCGTGTGAGGACATACCGTGTGATGATTTCATTGACTTTGATGTCTCATCCATCGTCTCAGACCAGCCTGACAACGCTTCCAATCAGGACTTCTTCGGTGGCATTGATAAGATTTTGGATAGCATCAAGAACGGTGCTGGTCTCCCTCTCAATCATGCTGAACCACCCAATTCCAACTCCAATAATGTCACTGCAGCAGAAGCAGGAGGAGAAGTGTGGTTGCCTAATAATGGTGCCTCCAATGCCACTCTGGAGGATGGGGGGAATCATCATGCTCATGCTCCTGCTCCTGCTGATGCTTTTGACCATTCTGCTGGTGTTCGGAGTAACGGCTTGAGTAAGCTGTCTAATGGGAATGAAGGGGGAGTTTTGGTTAACCATTCTCAGGAAAGAGGGGCACCCACTCTCAATGGAGGCCATGATTTTGATGGTGAAGAAAGATGCAGCAAAAGGGCTCGGCTTGGCGGCTACAAGAATGAGAGGCCTTATTATGGTAGAGGGAATTATCAAGGCAAGGACAGGGAGAGGTGTTTCAATAATAACAGGAAGAGGCCACGGGATAGGGATGAGATTGATAGGAGGGATAAGGATGGTGCTGGAAGGAAAAGAGAACATTATGGTGCTGTTGGCAGGAGGGATGTTAGAGATAGGGATTGGAGGGATAGAGAACCTAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCCAATGATATGGTCTTTCGCATGGGTGCTTGGGAACCTGATCGTAATCGAGAAGACAAAATGGCCATCGACACGAAACAGGAAAACAATGGAAAGCTTGATAAGAAGTCTGAGGAGCCTAAGGAGAGGGTTCCTGAGGAAAAAGCTAGACAGTATCAGTTGGATGTTCTTGATCAGGCAAAGAGGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAGGAGAGTTTGCAGAAGCAAAATAAGAAAATGCTTGCAGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGTTATCAAGTAGGCCACTATTGCGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAACATGTTTTAGTCATGACCGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGCCACCATGCCGTGAAGAAACACCCATATTCGCTGGTGATGTCTGAGTTCTACCATACAACACCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCTATAGTTTGCACCATTAAAGATCGTAAGGAGCTGGAGAAACATGTGCCGATGCCCTCTGAAGTTGTGGTGGGGTATGATAAAGCTGCCAGTTTATGTTATCTACACGAGCAGATAAAGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGTTCAAGAAGAAGCAAATGGCAGTTTATGGGAGCTAGAGATGCTGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCTGAAAGAACAGAAAGCGATGGAGCTGCAAACCTAATTCAGAAGTTGAGAGCTGTTAATTATGCACTTGGTGAACTGGGACAATGGTGTGCATATAAGGTTGCACAATCCTTTTTAGCAGCTTTGCAAAATGATGAAAGGGCCAACTACCAGCTTGATGTCAAGTTTCAGGAAACTTATCTGAGTAAAGTTGTCTCGCTTCTGAAATGCCAACTGTCAGAGGGTGCAGTTTCTGACAAAAATGCTGGTATTGATGACTCAGAGAATGGTGCAGCTCAAAGTGGGTCTGAACATGAAGAGATGGAAGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGCGGGGAGCACGTGGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTATCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCGTTAGTTTTGCCCAAGGTCTTTGCAGAGCTTCCATCACTTAGTTTTGTGAAGTGTGCAAGTTTGATTGGTCACAATAACAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAATTCCGTGATGGGCGGGTCACATTGTTGGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATCCGGCAATGCAATGTTGTTATTCGCTTTGACCTTGCAAAGACTGTTCTGGCATACATTCAATCCAGGGGACGTGCTAGAAAGCCTGGATCTGATTACATCCTGATGGTTGAGAGGGACAATTTGTCACATGAAGCATTCCTAAGGAATGCCAGGAACAGTGAGGAAACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTTAGTCATCTGAAGGACACTTCAAGATTGATTTCTGTTGACACCCGACCTGGAACAGTTTACCAGGTGAAGTCAACTGGTGCAGTTGTGAGCCTAAATTCTGCTGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCTAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAAGCACGAAAAACCAGGAGGTCCCACGGAATATTCTTGCAAGCTTCAACTGCCGTGTAATGCACCGTTTGAAAATCTTGAGGGTCCAATATGCAGTTCTATGCGTCTGGCACAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCTGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGATGAACAAACTGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAGTTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTGCAACAACTCCAAATTGCTTCATCTTTATATGTATGCTGTGAAGTGTGAAAATATAGGCCATTCAAAGGATCTGTTCTTGACTCAAGTTTCAAATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTAGGGGGTCGATAAATATCACTGAGAATCAGCTGGCATCCCTGAAAAGCTTTCATGTAAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATCTACCACTCCTTGGGATCCTGCAAAGGCATATTTGTTTGTCCCAATGGTTGGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAATAATTGGAGCTGATGCATGGAAGAATCCCCTCCAGAAAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACATCCTACCTATGGAATCAGAGGAGCTGTAGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTAGTTCCTAATAGAGATGCCATGCAAACACAAAAGCACATCAGTATGACTACCAATGGAAAATTGATGATGGCGGATACCTGTACTAATGCAGAGGATCTGGTTGGGAAAATTGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTAGATTCAATACGCTATGACATGTCAGCAGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTGGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATTTACAAGCAGCAACCTCTTATAAGAGGGCGTGGTGTATCTTACTGCAAGAATCTTCTGTCCCCTCGATTTGAGCACAGTGAAGCACATGACGGTGAATCTGAAGAGACACATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTTGTACATCCACTGCCTGGATCACTTGTCCGTGGTGCCCAAAGGTTGCCTTCGATAATGAGGAGGGTTGAAAGTATGCTACTTGCAGTTCAGCTTAAGAATATGATAAATTATCGTGTCCAGGCTTCAAAGATCTTGGAAGCCTTGACTGCCGCCTCTTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGTCAACTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTATTATATCAGTATGCATTAAGTAAAGGGCTTCAATCATATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCTGGGGTGCTGCCTGTCTTTGATGAGGATACCAAGGATGGGGAGTCATCTTTGTTTGACCAGGAGCGGTCCATTTCCAAGATCGAGAGGATGGATTGTCACACGGATGGATATGATGATGAGATGGAAGATGGTGAGCTTGAGAGTGATTCAAGTTCTTACAGAGTTCTATCGAGTAAGACACTTGCAGATGTTGTGGAAGCACTGATTGGGGTATATTATGTAGAAGGTGGTAAGAATGCTGCTAACCACCTTATGAAATGGATTGGCATTCAAATAGAGTTTGATCCTGATACAATGGAGTGTACAAGAAAGCCATTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATATGAAGTTTAAAGACAGGGGGCTGCTGGTAGAATCCATAACTCATGCCTCCAGGCCATCTTCAGGAGTATCCTGTTATCAGCGGTTGGAGTTTGTTGGTGATGCTGTCTTGGATCATCTTATTACCAGGCACTTGTTTTTCACTTACACAAGTCTGCCACCGGGACGTCTGACTGACCTTCGGGCTGCTGCTGTAAACAATGAAAATTTTGCACGTGTTGCTGTTAAACACAACCTTCATGTGCATCTTCGACATGGATCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTTCAAGATGAATTGTCAAAGCCAGGTTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCCCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCAGGTGCCATTTTTCTTGACAGTGGGAGGGATACTACCGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCAGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGCCAGCAGCAAGCTGAAGGCTTAGAGTATAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTATTCATTGATGGGGTGCAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAGGTGGGAAAAACTCAGGAGAAGGATGATGAAAACGGGAAAAAGAATGGAAACCAGACATTTACTAGGCAAACATTAAATGATATCTGTTTACGAAGAAATTGGCCTATGCCATTTTACAGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCGGTGCGTGTGAATACTACTGATAGAGGATGGACGGATGAATGTGTTGGAGAGCCAATGCCAAGCGTCAAGAAGGCCAAAGACTCAGCTGCTGTTCTTCTCTTAGAACTACTAAACAAATTATACTCGTGA 5892 0.4426 MEDGSRVPAAAVGDDPSYWLDACEDIPCDDFIDFDVSSIVSDQPDNASNQDFFGGIDKILDSIKNGAGLPLNHAEPPNSNSNNVTAAEAGGEVWLPNNGASNATLEDGGNHHAHAPAPADAFDHSAGVRSNGLSKLSNGNEGGVLVNHSQERGAPTLNGGHDFDGEERCSKRARLGGYKNERPYYGRGNYQGKDRERCFNNNRKRPRDRDEIDRRDKDGAGRKREHYGAVGRRDVRDRDWRDREPRGYWERDKSGSNDMVFRMGAWEPDRNREDKMAIDTKQENNGKLDKKSEEPKERVPEEKARQYQLDVLDQAKRKNTIAFLETGAGKTLIAVLLIKSIQESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMEAINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVGYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQETYLSKVVSLLKCQLSEGAVSDKNAGIDDSENGAAQSGSEHEEMEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERDNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKDEQTDEGDPLPGTARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYAVKCENIGHSKDLFLTQVSNFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGSINITENQLASLKSFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPMVGDKSVDPMNQIDWHLVETIIGADAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDAMQTQKHISMTTNGKLMMADTCTNAEDLVGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEAHDGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYRVQASKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKIERMDCHTDGYDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDTMECTRKPFNVPDSILRSVDFDALEGALNMKFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKDDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03974 1963 ProSitePatterns Ribonuclease III family signature. 1661 1669 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 Pfam Helicase conserved C-terminal domain 707 824 IPR001650 -
Pumo5g03974 1963 CDD DEXHc_dicer 303 502 - -
Pumo5g03974 1963 SUPERFAMILY RNase III domain-like 1398 1603 IPR036389 GO:0004525|GO:0006396
Pumo5g03974 1963 SMART helicmild6 740 826 IPR001650 -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 161 178 - -
Pumo5g03974 1963 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 711 871 IPR001650 -
Pumo5g03974 1963 CDD PAZ_CAF_like 1235 1384 - -
Pumo5g03974 1963 Gene3D Ribonuclease III domain 1623 1797 IPR036389 GO:0004525|GO:0006396
Pumo5g03974 1963 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 311 488 IPR014001 -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 988 1012 - -
Pumo5g03974 1963 FunFam Endoribonuclease dicer-like 1 1621 1795 - -
Pumo5g03974 1963 ProSiteProfiles Ribonuclease III family domain profile. 1626 1774 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 Pfam Ribonuclease III domain 1661 1774 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 Pfam Ribonuclease III domain 1439 1585 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 SMART PAZ_2_a_3 1242 1406 IPR003100 GO:0005515
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 1864 1884 - -
Pumo5g03974 1963 SMART riboneu5 1641 1797 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 SMART riboneu5 1421 1605 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 ProSiteProfiles PAZ domain profile. 1242 1382 IPR003100 GO:0005515
Pumo5g03974 1963 SUPERFAMILY PAZ domain 1260 1382 IPR036085 GO:0005515
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 1864 1880 - -
Pumo5g03974 1963 Gene3D - 1891 1961 - -
Pumo5g03974 1963 FunFam Endoribonuclease dicer-like 1 894 995 - -
Pumo5g03974 1963 CDD RIBOc 1642 1797 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 ProSiteProfiles Ribonuclease III family domain profile. 1425 1585 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 CDD SF2_C_dicer 704 834 - -
Pumo5g03974 1963 Pfam PAZ domain 1264 1402 IPR003100 GO:0005515
Pumo5g03974 1963 SUPERFAMILY dsRNA-binding domain-like 1756 1882 - -
Pumo5g03974 1963 Gene3D - 1798 1876 - -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 653 682 - -
Pumo5g03974 1963 Gene3D paz domain 1259 1380 - -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 188 230 - -
Pumo5g03974 1963 FunFam endoribonuclease Dicer homolog 1 1891 1960 - -
Pumo5g03974 1963 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1885 1958 - -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 130 145 - -
Pumo5g03974 1963 SUPERFAMILY dsRNA-binding domain-like 1889 1959 - -
Pumo5g03974 1963 SMART ultradead3 300 503 IPR014001 -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 265 302 - -
Pumo5g03974 1963 FunFam Endoribonuclease Dicer 1 1262 1380 - -
Pumo5g03974 1963 PANTHER DICER-RELATED 1245 1865 - -
Pumo5g03974 1963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 838 IPR027417 -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 93 230 - -
Pumo5g03974 1963 FunFam Endoribonuclease dicer-like protein 1404 1597 - -
Pumo5g03974 1963 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 899 994 IPR005034 GO:0016891
Pumo5g03974 1963 SMART DRBM_3 1886 1959 IPR014720 -
Pumo5g03974 1963 SMART DRBM_3 1801 1862 IPR014720 -
Pumo5g03974 1963 Gene3D - 298 542 IPR027417 -
Pumo5g03974 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1885 1960 IPR014720 -
Pumo5g03974 1963 Pfam Dicer dimerisation domain 899 987 - -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 264 302 - -
Pumo5g03974 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1800 1863 IPR014720 -
Pumo5g03974 1963 Gene3D - 697 863 IPR027417 -
Pumo5g03974 1963 FunFam Endoribonuclease dicer-like protein 299 539 - -
Pumo5g03974 1963 Gene3D Ribonuclease III domain 1403 1599 IPR036389 GO:0004525|GO:0006396
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 985 1012 - -
Pumo5g03974 1963 CDD DSRM_DCL_plant 1891 1952 - -
Pumo5g03974 1963 FunFam Endoribonuclease dicer-like 1 698 860 - -
Pumo5g03974 1963 MobiDBLite consensus disorder prediction 665 682 - -
Pumo5g03974 1963 Pfam Type III restriction enzyme, res subunit 310 470 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pumo5g03974 1963 SUPERFAMILY RNase III domain-like 1625 1796 IPR036389 GO:0004525|GO:0006396
Pumo5g03974 1963 CDD RIBOc 1421 1603 IPR000999 GO:0004525|GO:0006396
Pumo5g03974 1963 Gene3D Dicer dimerisation domain 894 995 IPR038248 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03974 Pumo-Chr5 89984098 89997537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03974 723 866 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 3.43e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03974 K11592 - gmx:100811631 3637.04