Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03972 ATGTCACGTATTGTCCTCCTCCTGACTTTTGTTGTGTGCTTGCCATATTCTTGTTCCCTCCAATCCCCTTTGATTCCAAACTCTTGCAATGAAACATGCGGGGGCCTCCATGTTCCCTTTCCATTCTATGTCAACACTTCTTGTGAGTCAATTTCCAGTGCCTTCCATCTCTCATGCTCAAATTCCTCTGCCCTTTTACTCAGAATTGGCCCAGTCAGCTACACAGTCTTGGAATTCTTCCCAGATGGTGTGCTGGTGGACTTTCCAGGCTCATCATCCTGTAGACAGTACAATGACTTGAATTCTTTTGGCAGAAGCTTTGCAGGGAAGGACAACTTTGGAGTGTCGGTTGACAATGTTATTGGCCTCTATGACTGTGAGGATTCCTCTCTGTGCAAAGCAGATTGTGAAACTATTGACTTGCCTGGTTGTGATGGAAAGGCTGGAGGCTCCCTTGCCTGCTGCTATCCACTCTCTGACCATTCCATATGGCATGTTGGAGATGGCTTTTCAGTGTTTTCTCAGTTTGGATGCAGAGGGGTTTCTAGTTGGGCCGTTCTGCGAGGCTCAACTTGGGGAAAACGTGGAGTCAAGTTGGAATGGGCCCTTCCCAGGAACTCCTCTTCCTCTAGGGAACTTTGTGCAAGGAATGCTAACATTGCCAATGCTACGGCAATTGAAGGAGGCGTGAGATGTGTCTGTCAAAATGGATATGTTGGTGATGGTTTTGCTAATGGAACTGGATGTTTGCAGGCCTGCATAAAGGATGGAAAGGAAGCATATGGAAGTGACTGCTACATCAAAAGACATGATCAAAGGAAATTTGTTATGATTGCCGGAATCATTGGCCCAGTTCTGATTGTTGCCTCCCTGGTTGCACTATTTTATCTTCTTAAAAGGCCAACAAAACCAGGGATGTTTGACACCGAGCAGGCTTACTATCAAAACATTACAATCCCCAAAGCTTGTAAAACTCGATTATTCAGCCTCCATGAGCTAGAGGAAGCCACTAAAGGATTTGAAGAGGGTCAGAAACTTATGCACGACAATAATGGAACAATTTTCGCGGGAGTTTTAGGGGATGGGTCTCACATAGCTGTCCACAAGTTACAATGTGAGAAGAAAGACTTAATACAAGTCCTGTCACAAATCGAGGTTCTATCTTCTATTGTGCATAGAAATATGGCCCGAATTCTTGGATGCTGTATTGAATCTGGCAACACTCTAGTAATTTATGAGTATCCTTCCAATGGTACTCTGGAGGAACATTTACATCAAAGCAAAGGACAACAACTTCGTTTAGATTGGTATAGGAGATTGACTATTGCTGCAGAAACAGCTAGTGTTCTTGCATTCTTACACTACGAGAACAATCCTCCCATACTTCACCATAACCTTAAATCTGCCTGCATCTTCCTAGATGATGACTATTCTGTCAAGATTGCAGGATTTGGTCTGATCAACTCCAATTTTTACTATGGTTCTCACTTACACAAGAACTATGAAGGATTTGGCATATGCAAAAATGATGTTTACGACATGGGTGTGTTGCTTCTTGAGATTATCTCAGGCTCAAATCACTTGGATTCACCAACTTTGGCCTTACAGCATATAAGGGCTGGAAAATTTGAAGAAATTTTTGACCCATTTCTATGCTATCATGAACAACCACATTATCGCCAAGAGCAAATGCAAATAATTGCAGATCTTGCTACAAGATGCCTGTTATTTGGTGTAGATGGAAGGCTAGGAATGATTGATGTTGTGAGGGAGTTAGTACACATGACTAAAGAAAGTCTTGATGGAGGAATTATGAAAGGACCTGCACTGGAGGAGACATTCTCAAATTCAAGTCTTCTTCAGATGATATCAATGTCTCCTGATTCTATGAATGTCCCTTGA 1902 0.4264 MSRIVLLLTFVVCLPYSCSLQSPLIPNSCNETCGGLHVPFPFYVNTSCESISSAFHLSCSNSSALLLRIGPVSYTVLEFFPDGVLVDFPGSSSCRQYNDLNSFGRSFAGKDNFGVSVDNVIGLYDCEDSSLCKADCETIDLPGCDGKAGGSLACCYPLSDHSIWHVGDGFSVFSQFGCRGVSSWAVLRGSTWGKRGVKLEWALPRNSSSSRELCARNANIANATAIEGGVRCVCQNGYVGDGFANGTGCLQACIKDGKEAYGSDCYIKRHDQRKFVMIAGIIGPVLIVASLVALFYLLKRPTKPGMFDTEQAYYQNITIPKACKTRLFSLHELEEATKGFEEGQKLMHDNNGTIFAGVLGDGSHIAVHKLQCEKKDLIQVLSQIEVLSSIVHRNMARILGCCIESGNTLVIYEYPSNGTLEEHLHQSKGQQLRLDWYRRLTIAAETASVLAFLHYENNPPILHHNLKSACIFLDDDYSVKIAGFGLINSNFYYGSHLHKNYEGFGICKNDVYDMGVLLLEIISGSNHLDSPTLALQHIRAGKFEEIFDPFLCYHEQPHYRQEQMQIIADLATRCLLFGVDGRLGMIDVVRELVHMTKESLDGGIMKGPALEETFSNSSLLQMISMSPDSMNVP 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03972 633 Gene3D Phosphorylase Kinase; domain 1 307 414 - -
Pumo5g03972 633 Gene3D Transferase(Phosphotransferase) domain 1 416 603 - -
Pumo5g03972 633 ProSiteProfiles Protein kinase domain profile. 340 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03972 633 FunFam probably inactive receptor-like protein kinase At2g46850 312 414 - -
Pumo5g03972 633 Pfam Wall-associated receptor kinase galacturonan-binding 29 79 IPR025287 GO:0030247
Pumo5g03972 633 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 595 IPR045274 GO:0007166
Pumo5g03972 633 SUPERFAMILY Protein kinase-like (PK-like) 323 592 IPR011009 -
Pumo5g03972 633 Pfam Protein tyrosine and serine/threonine kinase 343 490 IPR001245 GO:0004672|GO:0006468
Pumo5g03972 633 FunFam Putative WAK-related receptor-like protein kinase family protein 416 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03972 Pumo-Chr5 89978043 89980995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03972 29 592 Receptor kinase-like Gene Family AT2G23450 30.132 2.54e-59 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Pumo5g03972 PK_Tyr_Ser-Thr 5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03972 - - gmx:100810557 1205.28