LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03971	ATGGACGCCGACTCCTCTGGAGAAGAAGTGGTTATTAAAACAAGAAAACCATATACTATCACAAAGCAAAGAGAACGATGGACAGAGGAGGAACATAATAGATTTCTAGAAGCCTTGAAGCTGTACGGGCGAGCATGGCAGCGCATAGAAGGCAATATTTTGCTCACCATTAATACTTACAAGCATATAGGAACAAAGACTGCTGTGCAAATCAGAAGTCATGCTCAGAAATTCTTTACAAAGTTGGAGAAAGAGGCCTTTGTGAAGGGTGTTCCAATAGGACAAGCTCTTGATATAGACATCCCCCCTCCACGGCCAAAAAGAAAACCAAGCAATCCTTATCCCCGGAAGACCAATGTTGGTGCCCCAACATTACATAGCGGAGCAAAGCATGGAAATTCTCTCATTTCAATTGCATCTTCACATGGTAAACAAGCACTGGACTTGGAGAAAGAACCACTTCCAGAGAAACATAATGTCGACCTAAGGCCAACAACTGTAAAAGAAAAAAAGGACGAAAGCAGCTCAAAAGGATTTACCATTCTCCAGGAGGCACCCTGTTCATCTGTATCTTCTGCAAACAAGAATTCAATATTAATATCACTGTCGCTGAGGAATACATGTGCCTTAAGGGAGTTTATCCCTTCAGTAAAAGAGGTAATAACTCGAGATGAAACAAGCGAATCTTTTATTACTGATGAGCTTGAAAATCAGAAGTTGGAGGTAGATGATGGCAAGCACACACAAAAGACTAATGGCACTTGTAAAGTCTCTAAGTTGGAGAATTCTGGTGCTTCGGAATTGGTTCAAACTGAGAAAACAGATGGTCTTAATTGTGCATCAACAATAGATGGGATGCAAGGCAATCAGAATTACCCAAGACATGTCCCTGTGCACGTTGTTAATGGGAACCTTGGAACTAGTACTCAAAATCCATCCCCAGATACGGTGTTTCAAGACTCCATGTTTCAGCCGAAAGGAGGGGTTAATGGGCAACCTAATCTTGTCACCAATTCTGCTAAATCAAACTTAAGTGAAAGTCAAAATAACACCGCACGGTCCTCTATTCATCAATCATTTCCTCCTTGTCATCCCATCACACAACATAATCAGGATGATTACCATTCATTTCTTCACATGTCCTCCACATTTTCAAGTCTTATTGTCTCTACCTTGCTGCAAAACCCTGCAGCCCATGCTGCAGCAAGTTTTGCTGCTACATTTTGGCCCTATGCAAATGCAGAAACATCCACAGATTCTCCTGTGTGCGCTCCAGATTTTCCATCTAGACAAATTGGCTCGCCTCCAAGTGTGACAGCTATTGCAGCTGCTACAGTAGCTGCTGCAACTGCATGGTGGGCTGCCCATGGACTGCTTCCTTTGTGTGCTCCACTCCATACAGCTTTTACCTGTCCTCCTGCATCAGCGACTGCAGTTCCGTCAATGAGTAATGATGGATCACCACAAAAACCAGAACATGGAGAGATTAAACCACAAAATCCTCCTCTGCAAGATCAGATACTGGATCCAGAACACTCGGAAGCTCTGCAAGCTCAACATTCAGCTTCTAAGTCACCAGCTGTTTCTTCATCCAAATCTGAGGAGAGGGGAGATGCCAATTTAAATGCTTCACCAAAGGCTACTAATCATGAGATGAACCAAGCAATTTCTGAGAACCCCGATTCCAACAAAATGAAGGGCAGAAAACCAGTAGACCGTTCCTCATGTGGTTCCAATTCAGCCTCTAGCAGTGAAGAGGCTGAGTTACTAGAGAAGGATGAGAAAGAAAAGGAAGAGCCCAAAACACCAGATGCAAACGTTTTAGCTACTGAGCCTAGTAATCGTCGTAGTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGGGGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGCTTTTCACCTCCTCATGATTTGATAAATGAGGATAAGCAGATAGACAGCATCAAGGATAACAAGCAAAACACAGACTACAAAGATGAAGACCTTGAAAGCAAGAAATGCAGTTCTAATTGTGATGGGGTGCAGAAAAATCTGCCATTTGTCAAAGATAACAATGAGGAGGAGGGACTGCTAACAATAGGTCTTGGACTAGGAAAGCTAAAGACTCGTCGAACAGGATTTAAACCTTACAAAAGATGTTCGGTAGAGGCCAACGAGAACAGGATTGGAACAGCCTGCAACCAAGGTGAAGAAAAAGGTCCTAAGAGAATACGCTTGAATGGGGAGGCTTCAACTTGA	2295	0.4336	MDADSSGEEVVIKTRKPYTITKQRERWTEEEHNRFLEALKLYGRAWQRIEGNILLTINTYKHIGTKTAVQIRSHAQKFFTKLEKEAFVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTNVGAPTLHSGAKHGNSLISIASSHGKQALDLEKEPLPEKHNVDLRPTTVKEKKDESSSKGFTILQEAPCSSVSSANKNSILISLSLRNTCALREFIPSVKEVITRDETSESFITDELENQKLEVDDGKHTQKTNGTCKVSKLENSGASELVQTEKTDGLNCASTIDGMQGNQNYPRHVPVHVVNGNLGTSTQNPSPDTVFQDSMFQPKGGVNGQPNLVTNSAKSNLSESQNNTARSSIHQSFPPCHPITQHNQDDYHSFLHMSSTFSSLIVSTLLQNPAAHAAASFAATFWPYANAETSTDSPVCAPDFPSRQIGSPPSVTAIAAATVAAATAWWAAHGLLPLCAPLHTAFTCPPASATAVPSMSNDGSPQKPEHGEIKPQNPPLQDQILDPEHSEALQAQHSASKSPAVSSSKSEERGDANLNASPKATNHEMNQAISENPDSNKMKGRKPVDRSSCGSNSASSSEEAELLEKDEKEKEEPKTPDANVLATEPSNRRSRSISNLTDSWKEVSEGGRLAFQALFSREVLPQSFSPPHDLINEDKQIDSIKDNKQNTDYKDEDLESKKCSSNCDGVQKNLPFVKDNNEEEGLLTIGLGLGKLKTRRTGFKPYKRCSVEANENRIGTACNQGEEKGPKRIRLNGEAST	764

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	607	625	-	-
	Pumo5g03971	764	ProSiteProfiles	Myb-like domain profile.	19	79	IPR001005	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	477	625	-	-
	Pumo5g03971	764	PANTHER	SWI/SNF COMPLEX-RELATED	7	587	-	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	744	764	-	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	586	604	-	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	150	177	-	-
	Pumo5g03971	764	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	19	83	IPR017930	-
	Pumo5g03971	764	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	22	81	IPR006447	GO:0003677
	Pumo5g03971	764	Pfam	Myb-like DNA-binding domain	24	77	IPR001005	-
	Pumo5g03971	764	Gene3D	-	26	83	-	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	97	126	-	-
	Pumo5g03971	764	SUPERFAMILY	Homeodomain-like	18	84	IPR009057	-
	Pumo5g03971	764	SMART	sant	23	81	IPR001005	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	649	685	-	-
	Pumo5g03971	764	CDD	SANT	26	79	IPR001005	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	516	561	-	-
	Pumo5g03971	764	MobiDBLite	consensus disorder prediction	658	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03971	Pumo-Chr5	89945871	89957438	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pumo5g03971		Myb_DNA-binding	6.9e-10	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03971	K12133		-	gmx:778086	1223.76