Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03967 ATGGCCAACCTTCCAAATTCAAAGCTTTATGGAGAAGAGAAGATGAAAGGAGCGCAAGAATTACAAGATGAGGAAAGCTTCTCGCGTGCTATGCAGCTTGGCTCCTCCGTTGTGCTTTCCATGGCACTGCAATCGGCCACGGAGCTGGGCGTATTTGACGTGTTGCAAGAAGCGGGTGAAGGTGCTAAGCTGTCTGCGAAAGAGATAGCATCGAAGCTTTCGTGCAACAAAAATCCAGAAGCAGCCTCAATGCTAGATCGTGTACTCGCCCTTCTCGCCTCTCACTCCATTCTTAACTGTTCCCTCATTCCCGACCACCAAAACCTTGGGACCTTTCATAGGCTCTACACCATCACTCCCGTCGCCAGATTCTTTGCTCGCAATTCTGATGGGGTTTCTTTGGGACCATTGATGGCCTTGCTTCAAGACAACATCTTCCTACATAGCTGGTCCGAGCTGAAAAATGCAATTCGGGAAGGGGGTATTCCATTCAACAGGGTGTATGGCACTCATGCTTTTGAGTATCCAAGGTTGGACGCAAGGTTCAATCAAGTTTTTAACACAGCAATGATCAATCACACCACTATAGTGATGAAGAAGGTTCTGGAATGCTACAAAGGTTTTGAGGACATAAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGGATCAACATCAACTTGATCACTTCCAAATACCCTCATATCCAGGGTATCAATTTTGACTTGCCTCATGTCTTAGAACATGCTCCTTCCTATCCTGGAGTGGAACACGTTGGCGGAGATATGTTTGAAAATGTGCCTAAAGGAGACGCCATCTTTATGAAGTGGATACTTCATGATTGGAGTGATGAGCACTGTTTGAAGTTGTTGAAGAACTGCTATGACGCAATTCCTGATGATGGAAAGGTGATAGTTGTGGAGGCAGTTCTTCCAATTATACCAGAGACGACTAATGCTGCTTGGAAGGCCGTTTCACAAACGGATGTTCTGATGATGACTCAAAACCCGGGAGGGAAAGAGCGATCTGAACAAGAATTCATGGAATTGGCAACTGCAGCTGGATTTAGTGGCATCAGATATGAATGCTATGTTCGTACCTTCTGGGTTATGGAATTCTTCAAGTAA 1125 0.456 MANLPNSKLYGEEKMKGAQELQDEESFSRAMQLGSSVVLSMALQSATELGVFDVLQEAGEGAKLSAKEIASKLSCNKNPEAASMLDRVLALLASHSILNCSLIPDHQNLGTFHRLYTITPVARFFARNSDGVSLGPLMALLQDNIFLHSWSELKNAIREGGIPFNRVYGTHAFEYPRLDARFNQVFNTAMINHTTIVMKKVLECYKGFEDIKRLVDVGGGLGININLITSKYPHIQGINFDLPHVLEHAPSYPGVEHVGGDMFENVPKGDAIFMKWILHDWSDEHCLKLLKNCYDAIPDDGKVIVVEAVLPIIPETTNAAWKAVSQTDVLMMTQNPGGKERSEQEFMELATAAGFSGIRYECYVRTFWVMEFFK 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03967 374 Gene3D Vaccinia Virus protein VP39 126 374 IPR029063 -
Pumo5g03967 374 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 374 IPR016461 GO:0008168
Pumo5g03967 374 Gene3D - 10 125 IPR036388 -
Pumo5g03967 374 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 130 372 IPR029063 -
Pumo5g03967 374 Pfam Dimerisation domain 41 93 IPR012967 GO:0046983
Pumo5g03967 374 PANTHER O-METHYLTRANSFERASE 30 359 IPR016461 GO:0008168
Pumo5g03967 374 SUPERFAMILY "Winged helix" DNA-binding domain 22 128 IPR036390 -
Pumo5g03967 374 FunFam Caffeic acid 3-O-methyltransferase 7 125 - -
Pumo5g03967 374 FunFam Caffeic acid O-methyltransferase 126 374 - -
Pumo5g03967 374 Pfam O-methyltransferase domain 150 356 IPR001077 GO:0008171
Pumo5g03967 374 PIRSF O-mtase 8 374 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03967 Pumo-Chr5 89902799 89907160 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03967 20 374 Monolignol Biosynthesis Gene Families AT5G54160 53.501 2.74e-138 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03967 K13066 - gmx:100803633 694.886