Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03966 ATGGCTTCTTCGTTAGAATCGAACACAAAGCTTGCGAATGGGAGAGAGGAGCATGAGCATCTTAAAGGAGAAGAAGATGCGCTGACATTTTGCATGGAAAAGATGGTTTCGTTTGTGGTTCCAATGGCCTTGCGGACCTCGTTTGAGCTGGGCGTGTTTGACATCCTAGCCAAAGCCGGAGAAGGTGCGAAGCTCTCTGCAAAGGACATTGCACTTCAGATTGGGACCAACAACCCCCAAGCTCCTCCAATGTTGGATCGTCTTCTTAGCCTTTTGGTTACTCACTCTTTGCTATCTTGCTCTGTCCCTCAACAACAACCTCAGCCTCTCTCCTGCTTCCAAATATTTTGTTACTGA 357 0.4762 MASSLESNTKLANGREEHEHLKGEEDALTFCMEKMVSFVVPMALRTSFELGVFDILAKAGEGAKLSAKDIALQIGTNNPQAPPMLDRLLSLLVTHSLLSCSVPQQQPQPLSCFQIFCY 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03966 118 MobiDBLite consensus disorder prediction 1 21 - -
Pumo5g03966 118 Pfam Dimerisation domain 42 93 IPR012967 GO:0046983
Pumo5g03966 118 Gene3D - 10 113 IPR036388 -
Pumo5g03966 118 FunFam Caffeic acid 3-O-methyltransferase 9 112 - -
Pumo5g03966 118 SUPERFAMILY "Winged helix" DNA-binding domain 24 106 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03966 Pumo-Chr5 89889065 89889421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03966 15 100 Monolignol Biosynthesis Gene Families AT1G77520 44.944 1.31e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03966 K13066 - pvu:PHAVU_009G2586000 114.39