Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03963 ATGTTGGTAACACTCGCAGAGACAAAGAATATCCAAGATATACTCGGATCACTGCTCAGCTTGAATGGAAAGTTCCTTGATGAGTATTTGGAGCAAGGTTTGTTTGGTCTTGGTGCAGAGAGCCTGAAACAATCTCTGGCATCAAGTTTAGAGGATAACATTAACAATAACATGCCATTCCTGCAAATGCTTGAGAGTGTAGAATCCCCACAATTTATCCCCTTCAAAGAACCAAGCTTCGTTGAGAGCTGTGTCACTGTGACACATGACCTGGTGGTGGAAACGCAGTCATCTTGGGGTGTTGAGAAAGTGAGTTACGAGTGCAATATTCAAGATGAAGATGCTATAGCAGAGGTTGGCACAAGGGAACGGAGGAGATCAAAGAGAATAGCGAAGAACAAGGAAGACGTTGAGAAGCAGCGCATGACACACATTGCAGTGGAACGCAACAGGCGACGCCAAATGAATGACCATCTCACTGTGCTCAAATCCCTCATGCCCCCTTCCTATCTTCAAAGGGGTGACCATGCGTCAATCATTGGAGGTGCAATAGATTTTGTGAAGGAATTGGAGCAGTTACTTCAATCGCTGGAGGCACAAAAGAGACCGAGAAAGAACGAAAAGGTTGGCTCTAGCGGGCTGTTTGAACATGGTAATTATGAAGAAGTAAACTGTGGGGATGAGATTAAGGCAGAAAAGACCTCAGAGGCAGTAGCTGTAGAGGTCACTGTGATTCAAAACCATGTGAACTTGAAAGTTGAGTGCCTAAGGAGACATGGGCAATTGATAAAAGCTATTGTTGCCTTGGAAGAGCTTAAGCTAACTATTCTGCATCTCAATGTCACATCCTCAGAGGCTACAGTTCTCTACTCATTCAATCTCAAGATTGAAGAAGACAGTAAAGTAGTCTCAGCAAGTGAAATTGAAGAAGCGGTTGATCATATATTTAGATCCATTAATGATAGCTAA 969 0.4334 MLVTLAETKNIQDILGSLLSLNGKFLDEYLEQGLFGLGAESLKQSLASSLEDNINNNMPFLQMLESVESPQFIPFKEPSFVESCVTVTHDLVVETQSSWGVEKVSYECNIQDEDAIAEVGTRERRRSKRIAKNKEDVEKQRMTHIAVERNRRRQMNDHLTVLKSLMPPSYLQRGDHASIIGGAIDFVKELEQLLQSLEAQKRPRKNEKVGSSGLFEHGNYEEVNCGDEIKAEKTSEAVAVEVTVIQNHVNLKVECLRRHGQLIKAIVALEELKLTILHLNVTSSEATVLYSFNLKIEEDSKVVSASEIEEAVDHIFRSINDS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03963 322 Pfam Helix-loop-helix DNA-binding domain 140 191 IPR011598 GO:0046983
Pumo5g03963 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 190 IPR011598 GO:0046983
Pumo5g03963 322 PANTHER MAX DIMERIZATION, MAD 113 319 - -
Pumo5g03963 322 SMART finulus 145 196 IPR011598 GO:0046983
Pumo5g03963 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 205 IPR036638 GO:0046983
Pumo5g03963 322 CDD bHLH_AtFAMA_like 142 212 - -
Pumo5g03963 322 Coils Coil 187 207 - -
Pumo5g03963 322 Gene3D - 130 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03963 Pumo-Chr5 89876579 89878957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03963 33 320 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 42.947 2.09e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g03963 HLH 9.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03963 - - aprc:113862094 338.576