Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03961 ATGGGTGAAGTGGCGGGTGACAAGGGTGTGATGCAGACGCAGGGGGAACAGAGCAACAATGCCTCCGCGGTTCGGTGGGAACGCTTTCTGCCTCGGATGGTGCTTCGGGTCTTGCTTGTCGAAGCTGATGATTCTACTCGACAGATCATTGCTGCACTTCTCCGTAAATGCAGTTATAAAGTTGCTGCAGTTTGTGATGGCTTAAAGGCATGGGAGACATTGAAGAACAAAGCATCTGACATAGATCTCATATTAACAGAAGTGGATTTGCCATCAATATCTGGATTTTCACTTCTTACGTTAATCATGGAGCATGACATTTGCAAAAACATTCCTGTCATAATGATGTCTTCTCATGATTCGGTTAGCATGGTGTTCAAATGTATGTTAAAAGGTGCAGCTGATTTTCTTATAAAACCTGTTCGCAAGAATGAGCTAAGAAACTTGTGGCAGCATGTATGGAGAAGGCATGCAATAAGCAGGTCTCCTCAAAATTTAACACTGCCACAGATTAAACTTGGTTTTACTGCAGAAAACCATGCTGCAAGCAATGATTCTAGTGGTTCTGTGGCTTCTTCACCAAAAAATAATGAATGCAGCGAGAAAACGAGTGAGGCTCAAAGCACTTGTACATCACCATTTTTGGAAGCTGAGAGTACATACATGGAAAATATGCAGGATATATCACAGCTGAAGAGCTCTTCAAATTTGAGCAATGTTGACACAGTGAAGCATCAAAACTCTACCAAATGTGAAAGGGAATCAGATAAGCATAATGATGAAACTGGAGAGAAATCAATATTTATACCAGAAGATGCAAGGTGCAACAAAACTTTTAAACCAACAGGTTTAAGGCTTGGTCAAGGCTACGATTGTCGTGAAACGAGAAATCAAGACGAAGTTCTAAGAATAGAGTTGAGCAAAGCCAATCCTGATATTAATACAGATATTCATGGATGCAGTGATGAACTGGTAGATCCTAATACTGGGGCCATTGACTTGATTGCTACATTCAAGAATCTTCCAAAGAGCACTGATGAAAAATGTAGTTTCAGTAGTGGTAACACTGCCAAGTCTGATTTTGATACACAATTAGAACTTTCTTTAAGAAGAGATTTTCCTGGAAGCTCATGTAAAGCTGCATCTGAGGAAAGGCTAATATTGAACCATTCAAATGCTTCTGCCTTTTCTAGGTATAGTAGTAGTAAGTTGTTGCAGCCCCTTTTTCCAACACCATCAACTATGTCTGCTAAATTAACAAATGCCAGTCAGAATGCTCATGAATCCCATAAATTATCAGAAAATGCATCTACTTCTCATCAATATGGTGGAAAAAATAAAAATCAGGAGAAAATCACCACTCCAGTCATTGGTCAGTCTGGACAAGTTGATCCAAAATTACCAAACAGTCAACTTGGATGGTTTCCTGCTACAGGGGTTACTTCTGATCACAAGTCTACGGGAAATGGAAATGTCTTCCCTTCTATGCTTTATGCACAATCAGGTGTCCATCCCATATGGACTCCAAAATCGGTGTGCCGGAAAGAGAATTCTCCATTTCCCACGAGTACTTCCTCCCAGTCCAATCCTCAAAGTCACAACTCAGAACGTCATCACTGGTCGGAAGACGCAACCCATGCTTCTGATCAAAATGTAAATGATCAAAGCAATTTGGATTGTGAGACACATGACTCTCCTACTGCTAGTCAGAGTGCTGGTACTAGTTTTTACCATGATACAGCAAATCATAATAGTAGTGGTGTATACAGAAGCATGGGCTGCAGAAGTGATGCAAATGCTACTTCAGCTAAGGTAGCCAAGGACAGCCATGAAAGTTATATTGATAGTGGTCACTGCAGTTATGAAGGATTCATAGGGACAGATTCTCATCGCACCAACCAACGAGAAGCAGCTCTAACAAAGTTTCGACTGAAGCGGAAAGACAGATGCTATGAGAAAAAGGTGAGATATCAAAGCCGGAAGAGATTGGCAGAGCAGCGCCCTCGAGTGAAAGGGCAGTTTGTTCGCCAAGTACACAATGATCATCCAGTAGCAGATTAG 2061 0.4134 MGEVAGDKGVMQTQGEQSNNASAVRWERFLPRMVLRVLLVEADDSTRQIIAALLRKCSYKVAAVCDGLKAWETLKNKASDIDLILTEVDLPSISGFSLLTLIMEHDICKNIPVIMMSSHDSVSMVFKCMLKGAADFLIKPVRKNELRNLWQHVWRRHAISRSPQNLTLPQIKLGFTAENHAASNDSSGSVASSPKNNECSEKTSEAQSTCTSPFLEAESTYMENMQDISQLKSSSNLSNVDTVKHQNSTKCERESDKHNDETGEKSIFIPEDARCNKTFKPTGLRLGQGYDCRETRNQDEVLRIELSKANPDINTDIHGCSDELVDPNTGAIDLIATFKNLPKSTDEKCSFSSGNTAKSDFDTQLELSLRRDFPGSSCKAASEERLILNHSNASAFSRYSSSKLLQPLFPTPSTMSAKLTNASQNAHESHKLSENASTSHQYGGKNKNQEKITTPVIGQSGQVDPKLPNSQLGWFPATGVTSDHKSTGNGNVFPSMLYAQSGVHPIWTPKSVCRKENSPFPTSTSSQSNPQSHNSERHHWSEDATHASDQNVNDQSNLDCETHDSPTASQSAGTSFYHDTANHNSSGVYRSMGCRSDANATSAKVAKDSHESYIDSGHCSYEGFIGTDSHRTNQREAALTKFRLKRKDRCYEKKVRYQSRKRLAEQRPRVKGQFVRQVHNDHPVAD 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03961 686 CDD psREC_PRR 37 140 - -
Pumo5g03961 686 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 424 IPR045279 GO:0009736
Pumo5g03961 686 MobiDBLite consensus disorder prediction 546 579 - -
Pumo5g03961 686 Gene3D - 33 262 - -
Pumo5g03961 686 MobiDBLite consensus disorder prediction 515 534 - -
Pumo5g03961 686 MobiDBLite consensus disorder prediction 514 579 - -
Pumo5g03961 686 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Pumo5g03961 686 SUPERFAMILY CheY-like 35 166 IPR011006 -
Pumo5g03961 686 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Pumo5g03961 686 MobiDBLite consensus disorder prediction 422 449 - -
Pumo5g03961 686 MobiDBLite consensus disorder prediction 180 211 - -
Pumo5g03961 686 SMART REC_2 35 150 IPR001789 GO:0000160
Pumo5g03961 686 MobiDBLite consensus disorder prediction 246 264 - -
Pumo5g03961 686 Pfam CCT motif 635 677 IPR010402 GO:0005515
Pumo5g03961 686 MobiDBLite consensus disorder prediction 240 264 - -
Pumo5g03961 686 ProSiteProfiles CCT domain profile. 635 677 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03961 Pumo-Chr5 89858461 89864713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03961 634 679 Response Regulator Gene Family AT5G24470 89.130 1.87e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Pumo5g03961 Response_reg 5.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03961 K12130 - gmx:100779346 1225.31