Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03959 ATGGCATTGGCAGCTAATGCTACTCTCTCCCTCGCCTTCACTTCTTCCTCCTTACTGAAGCATAACCTCCAATTCGGAGCTGCTCCAAAACGATTCGTTTCCTGTTCTGCGGGCCCTCTTTCTTTGTGCCTTGTGGCGGGGCTCAGCTCCAAGGCTAGGGCTTTTACTGCCCCGGCGGCGGTGGTGGATGAAGAAACGGTGGTTGGCGTGGAGGAAGAAACGTGGAACCGAGCAAGACCAACCGAAGTGTACGTATGCAACCTTCCAAGAAGCTGTGACACACAACACCTTCTTCAAATGTTCAACCCTCACGGAACCGTTCTGTCTGCCGAGGTTTGCCGGAGTGCGGAGACTGGTGAAAGTAGAGGCAGTGCTTATGTCACAATGGCATCTGTTAACTCAGCAAGAAAAGCAATTGCTGCATTGGATGCATCGGATGTTGGTGGCCGCGAAGTCCGGGTTAGATTTTCGGCTGAGATGAATCCTAAGAGGAGGAATCTTGAAACAATGAACTCGTCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAGGGGTGCGAGTCCTGAAGACTTGAAACAACTTTTTGGTAGATTTGGTAATGTAGCTAGTGTAAGGGTGTTGCAAGATTTGAGAAAAGGGAATCGCAGGGTCTATGCGTTTGTCTCTTATCATTCAGAGACAGAACGTGATGCAGCAATGTCGCTCCATGGAACAGTAAAATCTGCCTCTGCCACTTTCCATTGTTGTGCTTCTTATTTCTTTTGCTTGTGTCTCATACCTAGTCTGGTCTTCCTTGCAGGAATTTTGTGGTCGTGTGCTAGTGATTAG 855 0.4807 MALAANATLSLAFTSSSLLKHNLQFGAAPKRFVSCSAGPLSLCLVAGLSSKARAFTAPAAVVDEETVVGVEEETWNRARPTEVYVCNLPRSCDTQHLLQMFNPHGTVLSAEVCRSAETGESRGSAYVTMASVNSARKAIAALDASDVGGREVRVRFSAEMNPKRRNLETMNSSPKRVIYYEGPHKLYVGNLSRGASPEDLKQLFGRFGNVASVRVLQDLRKGNRRVYAFVSYHSETERDAAMSLHGTVKSASATFHCCASYFFCLCLIPSLVFLAGILWSCASD 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03959 284 SMART rrm1_1 82 155 IPR000504 GO:0003723
Pumo5g03959 284 SMART rrm1_1 185 258 IPR000504 GO:0003723
Pumo5g03959 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 153 IPR000504 GO:0003723
Pumo5g03959 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 247 IPR000504 GO:0003723
Pumo5g03959 284 SUPERFAMILY RNA-binding domain, RBD 181 247 IPR035979 GO:0003676
Pumo5g03959 284 Gene3D - 63 171 IPR012677 -
Pumo5g03959 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 159 IPR000504 GO:0003723
Pumo5g03959 284 Gene3D - 179 250 IPR012677 -
Pumo5g03959 284 SUPERFAMILY RNA-binding domain, RBD 80 172 IPR035979 GO:0003676
Pumo5g03959 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 247 IPR000504 GO:0003723
Pumo5g03959 284 PANTHER OS02G0815200 PROTEIN 34 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03959 Pumo-Chr5 89816573 89818274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03959 81 248 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 7.50e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03959 - - gsj:114400287 369.777