Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03953 ATGCCGGAGAAGATGAGCATATCTGTGAATGGACAATCCAAAGTCCCTCCAGGCTTCCGGTTTCATCCAACCGAAGAGGAACTGTTGCAGTACTATTTGAGGAAGAAAGTGTCCTCCGAGAACATCGACCTCGACGTGATTCGCGACGTTGATCTCAAGAGGCTCGAACCATGGGACATACAAGAGGAGTGCAAAATAGGAAGCACCCCACAAAACGATTGCTACTTGTTCAGCCGCAAAGACAAGAAGTACCCGAAGGGAACGCGTACGAACCGCGCCACAAGGGCTGGGTTCTGGAAGGCGACCGGGCGCGACAAGGTCATATATAGCAACGGCAAGAGGATTGGAATGAGAAAAACTTTGGTTTTCTACGAAGGGCGTGCCCCCAATGGCCAAAAGTCCGATTGGATAATGCATGAATACAGGCTAGAAGACAACATCACCGCTGCCACCGAGGCTCAGGAAGAAGGCTGGGTGGTGTTCAAGAAGAAGAACCATCTCAAAACTCCTTCAGCTACAGCTACCTCCACCTTGTTTGATTCTTGCTGTCACGAGGGAGCTTTGGAGCAAATGAGCAGCAAGGCCAAGGAGAGCCAACAAAATATTATTCCTGTAGAGATGGTCACAGAAAGCAACACATCAAGAGGAGAGTACAATGGTGGCTTCACCAACTGGGAAACCCTTGATTGGCTTGTGGCATCACAACTGAATGGCCAAACTCATCCCACCATGGGAGGATATTGCAGTAGTGATCTGCAATTCCCCACCTTTCTATCATCTTCACCAATGCCAATTGCAACAACACACATTGCTCCCACAATACAGGATTACACCAGCCACGACATTGACCTCTGGAACTTTGTCCGATCCACAACTTCGGAACCACTGTGCCTCGCCGACACTCCAAATGTAACACTCTAA 921 0.4919 MPEKMSISVNGQSKVPPGFRFHPTEEELLQYYLRKKVSSENIDLDVIRDVDLKRLEPWDIQEECKIGSTPQNDCYLFSRKDKKYPKGTRTNRATRAGFWKATGRDKVIYSNGKRIGMRKTLVFYEGRAPNGQKSDWIMHEYRLEDNITAATEAQEEGWVVFKKKNHLKTPSATATSTLFDSCCHEGALEQMSSKAKESQQNIIPVEMVTESNTSRGEYNGGFTNWETLDWLVASQLNGQTHPTMGGYCSSDLQFPTFLSSSPMPIATTHIAPTIQDYTSHDIDLWNFVRSTTSEPLCLADTPNVTL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03953 306 SUPERFAMILY NAC domain 9 162 IPR036093 GO:0003677|GO:0006355
Pumo5g03953 306 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 198 - -
Pumo5g03953 306 ProSiteProfiles NAC domain profile. 15 166 IPR003441 GO:0003677|GO:0006355
Pumo5g03953 306 Gene3D NAC domain 24 168 IPR036093 GO:0003677|GO:0006355
Pumo5g03953 306 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03953 Pumo-Chr5 89759631 89760712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03953 1 286 NAC Transcription Factor Family AT2G46770 51.014 3.61e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo5g03953 NAM 2.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03953 - - gmx:100807338 360.533