Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03946 ATGTCAGAAGGTGCAGAAATTGATGAGCGTGTGGACCTTGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGACGATGGAGTGGATGGAGGTGAAGATGAAAATGCTGAAGGTAGTCTTGAAGAACATGAATATGAGGACTCGGCAGCAGAGGCTGGTGGGAAGGACCAATTGCCTGAAGCAGAAAAAAGTGACATTGCTGCTGAATTTGGGGATGATGATCAAAAACCGTCTTTCATTGATGAAGATGAGAAAGAGAAGCACGATGAACTTCTTGCTCTTCCACCTCATGGTTCTGAAGTCTTTATTGGTGGACTTCCTCGGGATGTATGTGAAGATGATTTAAGGGAATTGTGCGAGCCGATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACACGGGAGAAAACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCGCAAAAGGCTATTGAGGAGATACATAACAAGGAATTTAAGGGAAAAACTGTGAGGTGTTCACTTTCTGAAACCAAACACAGATTATTCATTGGTAACGTTCCAAAAACTTGGACGGAAGATGAGTTTAGGAAAGTCGTTGAAGGTGTTGGTCCTGGAGTTGATAACATTGAGCTCATAAAGGACCCTCAAAATCCAAGTAGGAATCGTGGGTTTGCATTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCGCGGCAAAAGATGTCAAGTTCTAGCTTTAAGCTGGATGGCAATACCCCAACTGTCACATGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATATGTCAAAAACATACCAGAGAATGTTACCACTGAACAATTGAAGGAATTATTCCGCCGCCATGGAGAAGTAACAAAAGTGGTCATGCCACCTGGTAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCGGAGAGGTCAAGTGCGTTGAAAGCTGTAAAAGATTCAGAGAAATATGAAATTGATGGCCAAGTGCTTGAAGTTGTTCTTGCCAAGCCTCAAGCTGATAAAAAACCTGATGGAGGTTATGCCTACAATCCTGGACTTCATCCAAACCATCTTCCACATCCTGCATATGGTAACTTTTCTGGAAATCCTTACGGCTCTTTAGGGGCTGGATATGGTGTTGCTGCTGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAAATGGTTCCAATGGTGTTACCAGACGGTCGAATTGGCTATGTTCTTCAACAACCTGGTGTACAAGTGCCACCTGCCCGACCCCGCAGAATTGATCGGAGCAATGGTCCAAGTGGGCAGCCAGGGCGAGGAGGAGGTAGTGGCAATGATGAAGGCAATCGTAGTAGAAGGTATCGACCCTATTAG 1446 0.4357 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDGVDGGEDENAEGSLEEHEYEDSAAEAGGKDQLPEAEKSDIAAEFGDDDQKPSFIDEDEKEKHDELLALPPHGSEVFIGGLPRDVCEDDLRELCEPMGDILEVRLMKDRDTGENKGYAFVAFKTKEVAQKAIEEIHNKEFKGKTVRCSLSETKHRLFIGNVPKTWTEDEFRKVVEGVGPGVDNIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSSSFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDSEKYEIDGQVLEVVLAKPQADKKPDGGYAYNPGLHPNHLPHPAYGNFSGNPYGSLGAGYGVAAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPARPRRIDRSNGPSGQPGRGGGSGNDEGNRSRRYRPY 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03946 481 MobiDBLite consensus disorder prediction 8 48 - -
Pumo5g03946 481 MobiDBLite consensus disorder prediction 1 86 - -
Pumo5g03946 481 SMART rrm2_1 107 180 IPR003954 GO:0003676
Pumo5g03946 481 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 187 267 - -
Pumo5g03946 481 MobiDBLite consensus disorder prediction 440 481 - -
Pumo5g03946 481 SUPERFAMILY RNA-binding domain, RBD 273 372 IPR035979 GO:0003676
Pumo5g03946 481 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Pumo5g03946 481 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 8 186 - -
Pumo5g03946 481 Gene3D - 270 375 IPR012677 -
Pumo5g03946 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Pumo5g03946 481 FunFam Heterogeneous nuclear ribonucleoprotein Q 271 362 - -
Pumo5g03946 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Pumo5g03946 481 MobiDBLite consensus disorder prediction 49 86 - -
Pumo5g03946 481 SMART rrm1_1 107 180 IPR000504 GO:0003723
Pumo5g03946 481 SMART rrm1_1 187 264 IPR000504 GO:0003723
Pumo5g03946 481 SMART rrm1_1 282 354 IPR000504 GO:0003723
Pumo5g03946 481 CDD RRM_SF 108 180 - -
Pumo5g03946 481 Gene3D - 8 186 IPR012677 -
Pumo5g03946 481 Gene3D - 187 267 IPR012677 -
Pumo5g03946 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Pumo5g03946 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Pumo5g03946 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Pumo5g03946 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Pumo5g03946 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 13 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03946 Pumo-Chr5 89627904 89632261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03946 108 434 Eukaryotic Initiation Factors Gene Family AT1G71770 26.178 4.05e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03946 K13161 - gmx:100790907 854.744