Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03943 ATGAGCAGCGTGAAGGTAGCGAAAGGTCGCATCCTGGTTGGGAAATACGAGTTGGGAAAAACGATTGGAGAGGGAAGCTTTGCCAAGGTCAAGTTCGCCAGGGATGTCGAGAACGGAAACTACGTCGCCATCAAAATCCTCGACCGTAAACATGTCCTCCGCCACAACATGATGGAACAGCTCATGAGAGAAATATCAACCATGAAGCTAATCAATCACCCAAACGTTGTTAAAATATTTGAGGTGGTGGCAAGCAAAACAAAGATTTACATTGTTCTGGAGTTTGTTGATGGGGGAGAACTATTTGACAAAATAGCTGCAAATGGGAGACTTAAAGAGGATGAAGCAAGAAATTATTTCCAACAACTTATTAATGCCATTGATTACTGCCATAGTAGAGGCGTGTATCATAGAGATTTGAAGCCTGAGAATCTTCTTTTGGACTCGAATGGTGTTCTCAAAGTTTCAGATTTTGGTTTGAGTACCTACTCACATAAAGAGGATGAACTGCTCCGCACTGCATGTGGAACCCCGAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGCTGGTTCTACATTTGATATCTGGTCTTGTGGAGTCATTCTCTTTGTACTTATGGCTGGGTACTTGCCTTTTGATGAACCAAGTCATATGGCTCTGTACAAAAAAATTGGCAGGGCAGAATTCTCTTGTCCATCATGGTTTCCGCCACAGGCAAAGAAATTGCTTAAACGCATTCTTGACCCAAACCCTCTAACGAGGATAAAAATTCCTGAGCTCTTAGAAGATGAATGGTTCAAAAAAGGATACAAGCCAACATCCTTCACCGAGGAAGTGCATCTAAGTGTAGATGATGTAGTCATTGCTTTCAATGAGTTTAATGAAAATCTAGTGACAGAGAGAAAAGAGAAACCCGTCTCCATGAATGCTTTTGAGCTCATTTCTAGATCACAAAGTTTCAATCTTGACAGTTTGTTTGAGAAGCAAACTGGTCAAGTAAAGCGAGAAACCAGTTTTACTTCACAGTGCCCTGCAAATGAAATTATGTTTAAAATCGAGGAAGCAGCCAAGCCACTGGGCTTTAATGTACACAAGCGAAATTATAAGATGAAGTTGCAAGGTGACAAGAGCGGGAGGAAGGGTCACCTTTCAGTGGCTACTGAGGTTTTTGAAGTGGCGCCCTCCGTGCACATGGTGGAGCTGCGAAAGACAGGGGGTGATACGCTGGAGTTTCATAAGTTCTACAAAATCTTCTCATCAGGGTTGCAAGACATAGTGTGGCATGATACTGAAGGAAAAAGATGA 1314 0.4231 MSSVKVAKGRILVGKYELGKTIGEGSFAKVKFARDVENGNYVAIKILDRKHVLRHNMMEQLMREISTMKLINHPNVVKIFEVVASKTKIYIVLEFVDGGELFDKIAANGRLKEDEARNYFQQLINAIDYCHSRGVYHRDLKPENLLLDSNGVLKVSDFGLSTYSHKEDELLRTACGTPNYVAPEVLNDRGYAGSTFDIWSCGVILFVLMAGYLPFDEPSHMALYKKIGRAEFSCPSWFPPQAKKLLKRILDPNPLTRIKIPELLEDEWFKKGYKPTSFTEEVHLSVDDVVIAFNEFNENLVTERKEKPVSMNAFELISRSQSFNLDSLFEKQTGQVKRETSFTSQCPANEIMFKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSVHMVELRKTGGDTLEFHKFYKIFSSGLQDIVWHDTEGKR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03943 437 FunFam Non-specific serine/threonine protein kinase 305 431 - -
Pumo5g03943 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 11 416 - -
Pumo5g03943 437 ProSiteProfiles Protein kinase domain profile. 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03943 437 SUPERFAMILY Protein kinase-like (PK-like) 12 304 IPR011009 -
Pumo5g03943 437 FunFam Non-specific serine/threonine protein kinase 9 309 - -
Pumo5g03943 437 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Pumo5g03943 437 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Pumo5g03943 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Pumo5g03943 437 SMART serkin_6 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo5g03943 437 CDD CIPK_C 312 419 - -
Pumo5g03943 437 Pfam NAF domain 308 368 IPR004041 GO:0007165
Pumo5g03943 437 Gene3D Transferase(Phosphotransferase) domain 1 96 292 - -
Pumo5g03943 437 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Pumo5g03943 437 Gene3D Kinase associated domain 1, KA1 305 431 - -
Pumo5g03943 437 Gene3D Phosphorylase Kinase; domain 1 5 95 - -
Pumo5g03943 437 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03943 Pumo-Chr5 89587867 89601981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03943 10 431 CBL-interacting serine-threonine protein kinases AT1G01140 72.960 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Pumo5g03943 Pkinase 2.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03943 - - gmx:100777218 827.78