Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03939 ATGGGTAGTGGGGAGAAGAGTGTGAAGGGTTTTCATTTGCAGCAGGGGAAGAAGCGAGGGGGAGTGCCGAAAGGGTGTTTGGCAATAAAAGTGGGTCAAGGAGAAGAGCAACAAAGGTTCGTGGTGCCGGTGATGTATTTCAATCACCCCCTCTTCATGCAGCTTCTCAAGGAGGCAGAGGAAGAGTATGGCTTCGATCAAAAAGGAACCATAACCATCCCTTGTCATGTCCAGCAGTTTAGGAACGTTCGAGGTATCATTGATAGGGAAAAGTCCCTCCATCACCACAATCATGTTCGCTGCTTTGGCTTCTGA 315 0.4889 MGSGEKSVKGFHLQQGKKRGGVPKGCLAIKVGQGEEQQRFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVQQFRNVRGIIDREKSLHHHNHVRCFGF 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03939 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 17 82 IPR003676 GO:0009733
Pumo5g03939 104 MobiDBLite consensus disorder prediction 1 21 - -
Pumo5g03939 104 Pfam Auxin responsive protein 17 83 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03939 Pumo-Chr5 89553528 89554246 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03939 22 98 Calmodulin-binding Proteins AT5G20810 46.154 5.31e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03939 K14488 - var:108342322 189.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03939 5 89553528 89554246 Pumo7g00607 7 9948596 9949227 PCT