Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03930 ATGGATACTCTATCAACCTCTGTTTCAACCCTCAAAGTTCCTCCACTCCCATCATCAACCTTCACAAATCGCGAATTCTATCGCTTCAAAGCATCCCCCACCCGTCCCCATCATGTTTTCTCCACTTCCACACCCAAATTTGTCCCCAAAACCAAAACTTTCTCCCACAACAAATCTTCTCCATTCTCCTCCTCACCCCTCAAACCCAAACCATCTTCTCCAATATTCCATCCAAATCCCGCTACTGGGTATGCTGCAGCTCTCGTGGACGTGGCCCACAACAGCAATTCCCTTCACTTTGTTCACGGCGATGTTCAGAGGCTCTTGAAATTGCTGCAAACTGTGAAGCTTCCATCACCAGCGGTTGAGCAGGGAAACTTTCACAGGCACGTGGTGGCGTTGCTGAAGATGCTGCTGAAGAAGAACAAGGTGGAGATTGTGAAGGAGGTGCTGCAAGAGTTCGAGAGGATTTACGATGAGCTTTGCGGAACTCAAATGGTTTTGGTTTCGTCAAAGACTAAGATGGGGGAAGATGAACTGTTTGGGATTGCGAAAAGCGTGCACCAATTGAGTGGGGCTGTGAGGGTGAAGTTCATCATTCCTGGAATTAAAGATGAGACCGACTTTCATTGGCAACTTCGATTCGAGTACGACACTCGTCAATCAGAGCTCGAATGCTTGTTCGCCAAGTATGGCGGGATTGACCGCGTTGACATGAAATCTGGTTTTGCTTTTGTATATTATGAGGACGAGCGAGATGCTGAAGATGCAATTTGTGCACTTGACAACTTTCCGTTTGGATATGAAAAACGAAGATTGGTGAACATGGCCACCATTGGGATGGCTCAAGGGCAAACAAAAGGCCAAAACCCTATTCGAGTTCGTGATATTGAAAGATACTTTGAACCTTATGGGAAGGTTCTTAATGTTAGAATTCGTTGGAACTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCTACTAAAGCTCTTGAGTGCACACATATGAGTAAGATACTGGACAAAGTGGTGTCTGTTGAGTATGCTCTAAGGGATGATGATGAAAAGGGTGACAGTCCTAGAAGAGGGGGTTATGGGAGATCCCCTAGTCCAAGATATAGGAGGCGACCAAGTCCTGACTACAGTTGTCCACATAGCCCTGCATATGATAGGTATAATGGACCAGCCTATGACAGGCGCAAGAGCCTTGATTATGGTAGGCATAGGAGTCCTGAATATGGTAGACATTGCAGATGCGTAGTAGTCATGGCAAATTATGCTGATAGAACCTGA 1293 0.4578 MDTLSTSVSTLKVPPLPSSTFTNREFYRFKASPTRPHHVFSTSTPKFVPKTKTFSHNKSSPFSSSPLKPKPSSPIFHPNPATGYAAALVDVAHNSNSLHFVHGDVQRLLKLLQTVKLPSPAVEQGNFHRHVVALLKMLLKKNKVEIVKEVLQEFERIYDELCGTQMVLVSSKTKMGEDELFGIAKSVHQLSGAVRVKFIIPGIKDETDFHWQLRFEYDTRQSELECLFAKYGGIDRVDMKSGFAFVYYEDERDAEDAICALDNFPFGYEKRRLVNMATIGMAQGQTKGQNPIRVRDIERYFEPYGKVLNVRIRWNFAFVQFETQEDATKALECTHMSKILDKVVSVEYALRDDDEKGDSPRRGGYGRSPSPRYRRRPSPDYSCPHSPAYDRYNGPAYDRRKSLDYGRHRSPEYGRHCRCVVVMANYADRT 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03930 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 279 IPR000504 GO:0003723
Pumo5g03930 430 SUPERFAMILY RNA-binding domain, RBD 295 377 IPR035979 GO:0003676
Pumo5g03930 430 SUPERFAMILY RNA-binding domain, RBD 215 283 IPR035979 GO:0003676
Pumo5g03930 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 351 IPR000504 GO:0003723
Pumo5g03930 430 Pfam ATP synthase delta (OSCP) subunit 84 197 IPR000711 GO:0015986|GO:0046933
Pumo5g03930 430 MobiDBLite consensus disorder prediction 50 66 - -
Pumo5g03930 430 Gene3D - 214 278 IPR012677 -
Pumo5g03930 430 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 81 161 IPR026015 -
Pumo5g03930 430 MobiDBLite consensus disorder prediction 50 73 - -
Pumo5g03930 430 Gene3D - 289 382 IPR012677 -
Pumo5g03930 430 SMART rrm1_1 278 347 IPR000504 GO:0003723
Pumo5g03930 430 SMART rrm1_1 214 275 IPR000504 GO:0003723
Pumo5g03930 430 MobiDBLite consensus disorder prediction 351 395 - -
Pumo5g03930 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 295 344 IPR000504 GO:0003723
Pumo5g03930 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 266 IPR000504 GO:0003723
Pumo5g03930 430 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 214 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03930 Pumo-Chr5 89414128 89420562 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03930 76 200 Primary Pumps ATPases AT4G09650 30.556 1.65e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03930 K12893 - gmx:100526851 325.865