Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03924 ATGGGAAGAGCTCCTTGTTGCTCCAAAGTAGGGTTGCACAGAGGTCCATGGACTCCTCGAGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGAGAAGGCCAGTGGAGATCACTACCAAAAAGAGCTGGTCTTCTTAGATGCGGAAAAAGTTGCAGACTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACCCCAGAGGAAGATGATCTTATAATTAGAATGCATTCACTTTTAGGAAATAGATGGTCCCTCATCGCTGGAAGATTACCGGGACGAACAGATAATGAGATAAAGAACTATTGGAATACCCATCTCAGTAAGAAGCTGAGAAATCAAGGAACAGATCCAAAGACACATCAGAAATTAACTGAAGCACCAGAGAATAAGAAGAAGGGCAAAAAGAAGAATAAGAAAAAGACTAGTACTGAGAATAACAACAAAGGGTCAGAGAAAACCTTAGTTTATCTACCAAAACCCATAAGGGTTAAGGCTTTATCATGTATACCCAGAACGGATAGCACCTTCACCCTGGATTCCAATTCAGCTAGTGCATCAACGAGCCAAGAGAAAGTTCATAGCCCAGATTGGGGGGTAGGTAGCGATGGAGACAATATTGGTGGGATTGGAATATTTTTTGGTAAAGACCATGACCTAGTCAACAGTGCCTCTTTCGTTGAATGCCATTCTGATCTTCACACTGAGGATCATGGTACGCTAGAAAAGCTCTATGAAGAGTACTTGCAGCTCTTGAATGTTGAGGAGAAACCAGATGAATTAGATTCTTTTGCTTAA 813 0.4145 MGRAPCCSKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLSKKLRNQGTDPKTHQKLTEAPENKKKGKKKNKKKTSTENNNKGSEKTLVYLPKPIRVKALSCIPRTDSTFTLDSNSASASTSQEKVHSPDWGVGSDGDNIGGIGIFFGKDHDLVNSASFVECHSDLHTEDHGTLEKLYEEYLQLLNVEEKPDELDSFA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03924 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pumo5g03924 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo5g03924 270 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pumo5g03924 270 CDD SANT 16 61 IPR001005 -
Pumo5g03924 270 Gene3D - 71 159 - -
Pumo5g03924 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo5g03924 270 FunFam Myb transcription factor 11 67 - -
Pumo5g03924 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pumo5g03924 270 Gene3D - 14 66 - -
Pumo5g03924 270 SMART sant 13 63 IPR001005 -
Pumo5g03924 270 SMART sant 66 114 IPR001005 -
Pumo5g03924 270 MobiDBLite consensus disorder prediction 115 158 - -
Pumo5g03924 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo5g03924 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo5g03924 270 FunFam Transcription repressor MYB5 71 159 - -
Pumo5g03924 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 192 - -
Pumo5g03924 270 CDD SANT 71 112 IPR001005 -
Pumo5g03924 270 MobiDBLite consensus disorder prediction 185 205 - -
Pumo5g03924 270 MobiDBLite consensus disorder prediction 117 137 - -
Pumo5g03924 270 MobiDBLite consensus disorder prediction 185 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03924 Pumo-Chr5 89364487 89366429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03924 4 142 MYB Transcription Factor Family AT3G13540 67.832 3.21e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo5g03924 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03924 K09422 - gmx:778044 443.736