Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03923 ATGGGGTTCCATGCTGAGGATATAAAGGCGAGCATACATCAACCTTGCGCAGCTTGCAGGATGTTACGCCGCAGATGTGACAGTAAGTGCGTACTTGCTCCATATTTCCCAACCGATGAGGTTGAGAAATTTGCTGGAGTGCATAGAGTCTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTCGAGGAAACAAAGAGAGAGGATGCTGTTAAAGCGATGGTGTACGAGGCGACGGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTACCAGTTACAAAAGATGATTCAGGAACTGAAGGCACAGCTGGAGTCGATAAAAACTCGTGTATCAGAACTGCGAGAACAAAAAGATCAGTTGTTGAGTATTTGTCACAACAACAACGCTTGTGGCCACCTTGATCCCGTCAATGATGACCATATCTTTGATGGTTACGGTACTTTGTCGGCAGACTTTGATCATCTCATGGCCTCAGATCCATTTGAATTTCCTATAGAAGATTGTGGCTGGGGGGTATATAGCAATATGTCAACCACCTCCTGCTAG 561 0.4563 MGFHAEDIKASIHQPCAACRMLRRRCDSKCVLAPYFPTDEVEKFAGVHRVFGASNVIKMIQMVEETKREDAVKAMVYEATARLRDPVYGSAGAIYQLQKMIQELKAQLESIKTRVSELREQKDQLLSICHNNNACGHLDPVNDDHIFDGYGTLSADFDHLMASDPFEFPIEDCGWGVYSNMSTTSC 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03923 186 Coils Coil 94 128 - -
Pumo5g03923 186 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Pumo5g03923 186 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Pumo5g03923 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 121 - -
Pumo5g03923 186 SUPERFAMILY Spectrin repeat 74 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03923 Pumo-Chr5 89346343 89347160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03923 12 131 AS2 family AT2G28500 55.000 3.64e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pumo5g03923 LOB 1.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03923 - - gmx:100803085 278.87