Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03918 ATGGCACATCTGGAGGGTGGTCTCAGAAGCGCGCCAAGTTCTCACCCAGAAACAGGTGTGGGAGACGGCGATCTGTACACGCAACTATGGAAGCTATGTGCGGGGCCTTTGGTGGATGTTCCTCGCGAAGGGGAGAGAATTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCTTCGACTAATCAGGGACTGAACCAGGAACTGAGCCAGCAAATACCTCATTTCAATCTCCCGCCCAAGATTCTGTGCCGCGTTGTGCACATTCAGTTGTTGGCGGAACAAGAAACCGATGAAGTTTATGCTCGTATCACTTTGCTTCCAGAATCAAATCAAGATGAACCAACGAGTCCAGACCCAAGTCCACCCGAGACACAGAAACAGACTTTTCACTCTTTTAGTAAGATATTAACTGCTTCTGATACTAGTACACATGGAGGATTTTCAGTTCTGCGGAGGCACGCTACCGAGTGTCTGCCTCAATTGGACATGACCCAAACTACCCCCACTCAGGAATTGCTAGCAAAGGATCTTCATGGGTTTGAGTGGAAGTTTAAGCATATATTCAGAGGTCAACCAAGGAGGCACTTGCTTACAACTGGCTGGAGTACATTTGTCACATCCAAAAGACTGGCTGCTGGAGATGCTTTTGTTTTTTTAAGGGGAGAGAATGGTGAACTGAGAGTTGGTGTAAGGCGTGTTACCCGGCAGCAGAGTCCTATGCCTTCATCTGTGATATCAAGCCAGAGTATGCATCTTGGAGTGCTTGCCACTGCCTCTCATGCATTTTTGACAAGTACCATGTTTGTGGTTTATTACAAACCTAGGACTAGCCAGTTTATTATTGGTCTAAACAAATATCTTGAGGCAGAAAACAATAAGTTTTCTGTTGGCATGCGTTTTAAGATGAGATTTGAGGTGGAGGACTCACCTGAGAGAAGGTTTTCTGGTACTGTTGTTGGTGTTGGGGATGTATCTCCAGGATGGCAGAACTCTCAGTGGCGTTCATTGAAGGTTCAATGGGATGAACCAGCAATAATTCCAAGGCCAGAGAGGGTTTCTTCGTGGGAGATAGAGCCTTTTGTTGCTTCCACTGCTTTGAATGTCACTCAACAAGTGGTGAAAAGCAAAAGGTCCAGGCCTGAGGTTTCATCTTCTGAAGTTGCTCCTAATTCCCCTGCTCCAGCATTGTGGTATCATGGACCACATGACCCTACAGCATTAGGTGGCAGTGCAGAGGTCGAAAGCAATGAAAACCCAGTTGTATGGTCTACCCGGCAGAAAGAAATTAATGGCAATCCTATGAATGGTAACAAGAGCAGCTCAAGAGTCCGTGTGGAAGGAATGTGGGCTTCTTCCCCACATTCAAACCTTTTTCCGGACCCCAAAAACAGCAAAGCTGTCACAGCACAATCATCTGTTTCATCTAGGCCGAATGATGATTCGGCACATGATCCCGTGGAATGTGGTCGTAAAAGGACTAGTGAGAATCCCATGGATTGTTGGTTATTTGGAGTTAATTTGACTAACAATTTTGCTAATGTTCCCCTCCCACTCCCGGATAATAAACCAGCTATTCTTCCTAGTGGTCCCAAAGATTCTATTCCTGTTGCTGCATGTGAAACTGAGGCTGGTCAGAATCCCAATTATTCACTGTCCAACCAAATTATTTCTGATGGATCACCCAGTCCCAGTGAGAGACACACCAAGCAGCCCACTGTACCATCCACCAGGACTCGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCAGTTGACCTTACCGTGTTAAAAGATTATGATGCTCTCATAGATGAGCTTGAGAAAATGTTTGATATTAAGGGAGAGCTTCGAATGCAGACCAAATGGGCCATTACTTTTACTGATGATGAAAATGACATGATGCTCGTTGGTGATGATCCATGGCCGGAGTTCTGTACCATGGTGAAGAAGATTTTCATTTGTTCAAGGGAAGATGTGAAGAAGATGAAAAGCAAGCATTCTGGTTCTTCATCAGAGGGTGAAGAAACTTTGTTGAGCCAAGACTTCACAGAATAA 2067 0.4552 MAHLEGGLRSAPSSHPETGVGDGDLYTQLWKLCAGPLVDVPREGERIFYFPQGHMEQLQASTNQGLNQELSQQIPHFNLPPKILCRVVHIQLLAEQETDEVYARITLLPESNQDEPTSPDPSPPETQKQTFHSFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELLAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLAAGDAFVFLRGENGELRVGVRRVTRQQSPMPSSVISSQSMHLGVLATASHAFLTSTMFVVYYKPRTSQFIIGLNKYLEAENNKFSVGMRFKMRFEVEDSPERRFSGTVVGVGDVSPGWQNSQWRSLKVQWDEPAIIPRPERVSSWEIEPFVASTALNVTQQVVKSKRSRPEVSSSEVAPNSPAPALWYHGPHDPTALGGSAEVESNENPVVWSTRQKEINGNPMNGNKSSSRVRVEGMWASSPHSNLFPDPKNSKAVTAQSSVSSRPNDDSAHDPVECGRKRTSENPMDCWLFGVNLTNNFANVPLPLPDNKPAILPSGPKDSIPVAACETEAGQNPNYSLSNQIISDGSPSPSERHTKQPTVPSTRTRTKVQMQGVAVGRAVDLTVLKDYDALIDELEKMFDIKGELRMQTKWAITFTDDENDMMLVGDDPWPEFCTMVKKIFICSREDVKKMKSKHSGSSSEGEETLLSQDFTE 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03918 688 FunFam Auxin response factor 132 236 - -
Pumo5g03918 688 SMART B3_2 134 236 IPR003340 GO:0003677
Pumo5g03918 688 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Pumo5g03918 688 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Pumo5g03918 688 MobiDBLite consensus disorder prediction 1 20 - -
Pumo5g03918 688 MobiDBLite consensus disorder prediction 453 495 - -
Pumo5g03918 688 MobiDBLite consensus disorder prediction 458 481 - -
Pumo5g03918 688 Gene3D - 295 367 - -
Pumo5g03918 688 MobiDBLite consensus disorder prediction 377 392 - -
Pumo5g03918 688 MobiDBLite consensus disorder prediction 377 421 - -
Pumo5g03918 688 Gene3D - 575 667 - -
Pumo5g03918 688 Pfam Auxin response factor 260 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pumo5g03918 688 MobiDBLite consensus disorder prediction 546 582 - -
Pumo5g03918 688 FunFam Auxin response factor 574 667 - -
Pumo5g03918 688 SUPERFAMILY CAD & PB1 domains 575 655 - -
Pumo5g03918 688 Pfam AUX/IAA family 624 660 IPR033389 -
Pumo5g03918 688 Pfam AUX/IAA family 576 615 IPR033389 -
Pumo5g03918 688 ProSiteProfiles PB1 domain profile. 579 660 IPR000270 GO:0005515
Pumo5g03918 688 MobiDBLite consensus disorder prediction 667 688 - -
Pumo5g03918 688 SUPERFAMILY DNA-binding pseudobarrel domain 125 263 IPR015300 -
Pumo5g03918 688 CDD B3_DNA 132 234 IPR003340 GO:0003677
Pumo5g03918 688 Gene3D - 131 235 IPR015300 -
Pumo5g03918 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 667 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pumo5g03918 688 FunFam Auxin response factor 295 366 - -
Pumo5g03918 688 MobiDBLite consensus disorder prediction 110 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03918 Pumo-Chr5 89286476 89290808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03918 21 666 B3 DNA Binding Superfamily AT4G23980 58.308 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pumo5g03918 B3 1.4e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03918 K14486 - gmx:100820503 1121.3