Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03916 ATGAAGGTTGACGCGGTGGTGTGGGACGAGGAGGAGAAGGCGATGGCTGTGGCTGTTCTGGGCGGTCGAGCGTTGGAGTTTTTAATGAGAAACTCGGTGTCGAATGAGAGTGTTCTAATGGCGGTTGGGAGTGAAGAGGGACTTCAGAACAAGCTCTCGGATCTGGTGGAGCGTCCCAACGTGTCCAATTTCAGCTGGAACTACGCGATTTTCTGGCAACTCTCGCAGTCCAAACCCGGCGACTGGGTTCTGGGTTGGGGAGACGGGTGCTGCAGGGAACCCAACGAGGAGGAAGAGGGTGCGGTCAGAGGAACACTGCGGCTTCTTCGCGTGGACGAGGAGATGCAGCAGAGGATGCGGAAGAGGGTGTTGCAGAAGCTGCACACAACTTTCGGAGGTTCCGATGAGGACAATTACGCTTTTGGCCTTGACCATGTAACCGACACGGAGATTTTTTTTCTTGCTTCCATGTACTTCTCTTTCCCTCGCGGGCATGGTGGCCCAGGTAAGTGCTTCGCGTCCGGGAAACCTTTGTGGCTCAAATCTGTGTCTGATTACTGCGTGCGTTCTTCCTTGGCTAAATCTGCGGGAATTCAGACTATTGTTTTGGTCCCTACTGATTTGGGAGTGGTGGAGTTGGGTTCTGTGAGGATTTTACCCGAGAGTTTTGAACTCTTGCAGGCTGTTAAATCTGTGTTTTCCACGCAGCCTTCTTCATACCCTGGGCTGAACGTGGGCACAGGTGGGAATGCGGTTTTTACTGGTTTGGCAATTGGGGATGGAGGAGTTTCAATTCCAAAGGTTTTTGTCAATCGGACGCATTTCAGAGAGAAACTTGCTGTTAGAAAAATGGACGATAATAGGCCTTGGGGTCACCCCGATGGGAACAACAACGTTAGTTTTCCGAATGCACGGAGTAATGGTCTTCATGTTTCGGGTTGGGTAGTGAATTCAGGTTTGAGGCCGCCTGGTCCTGTTGAGATTTTTGCTCCTAGGGCCTCCACCAGCAGTGTCGTGAGACAGGATTTCAGTCTGAGCAATAATAGCTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTTACCGGAGCCACTTCCAGGCCTTCTTCTGTGAGACCAGTTGTTGGTGAATCAGAGCTTTCTGATGTTGAGGCCTCTTGCAAGGAGGAGCAACCGAGTGTTGCAGATGAAAGGAAGCCCAGGAAGCGGGGTAGGAAGCCTGCTAATGGAAGGGAAGAGCCTCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGCGAGAAGCTCAACCAGCGGTTCTATGCATTAAGATCTGTGGTGCCTAATATCTCCAAGATGGACAAAGCGTCGTTGTTGGGTGATGCCATTGCTTATATTAACGAGCTTCAGGCTAAAGTCAAGATCATGGAGGCCGAAAGAGAAAGATTTGGAAGCACTTCAAAGGATGGATCAGCTTTGGAGGCTTACTTGAGATCAGAAAATCAGGAGAAAGAAGCAGCTCCTCCTCCTGATGTGGATATTCAAGCTGTTCAAGATGAGGTCATTGTAAAGGTGAGCTGCCCTCTTGATACTCACCCTGTTTCAAAAGTAATCCAAACACTCAAAGAAGCACAGATCAGTGTTGTAGAGTCAAAACTTGCTGCTGCAAGTGATACTATTTTCCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTCACAAAGGACAAGTTGATTGCTGTATTCTCCCCAACAGAATCCAACTCATTGCAGCCATTGTCATCAGTTGGATAA 1776 0.4916 MKVDAVVWDEEEKAMAVAVLGGRALEFLMRNSVSNESVLMAVGSEEGLQNKLSDLVERPNVSNFSWNYAIFWQLSQSKPGDWVLGWGDGCCREPNEEEEGAVRGTLRLLRVDEEMQQRMRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEIFFLASMYFSFPRGHGGPGKCFASGKPLWLKSVSDYCVRSSLAKSAGIQTIVLVPTDLGVVELGSVRILPESFELLQAVKSVFSTQPSSYPGLNVGTGGNAVFTGLAIGDGGVSIPKVFVNRTHFREKLAVRKMDDNRPWGHPDGNNNVSFPNARSNGLHVSGWVVNSGLRPPGPVEIFAPRASTSSVVRQDFSLSNNSYQPQRQVQMQIDFTGATSRPSSVRPVVGESELSDVEASCKEEQPSVADERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKVKIMEAERERFGSTSKDGSALEAYLRSENQEKEAAPPPDVDIQAVQDEVIVKVSCPLDTHPVSKVIQTLKEAQISVVESKLAAASDTIFHTFVIKSQGSEQLTKDKLIAVFSPTESNSLQPLSSVG 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03916 591 Pfam Helix-loop-helix DNA-binding domain 417 463 IPR011598 GO:0046983
Pumo5g03916 591 Coils Coil 459 479 - -
Pumo5g03916 591 CDD bHLH_AtAIB_like 410 475 - -
Pumo5g03916 591 MobiDBLite consensus disorder prediction 383 424 - -
Pumo5g03916 591 Gene3D - 406 478 IPR036638 GO:0046983
Pumo5g03916 591 PANTHER MYC 35 574 IPR045084 GO:0003700|GO:0006355
Pumo5g03916 591 FunFam Transcription factor bHLH13 406 480 - -
Pumo5g03916 591 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 416 476 IPR036638 GO:0046983
Pumo5g03916 591 SMART finulus 419 468 IPR011598 GO:0046983
Pumo5g03916 591 MobiDBLite consensus disorder prediction 365 424 - -
Pumo5g03916 591 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 413 462 IPR011598 GO:0046983
Pumo5g03916 591 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 48 233 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03916 Pumo-Chr5 89229762 89231949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03916 1 591 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.285 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo5g03916 bHLH-MYC_N 2.7e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03916 - - gmx:100801502 988.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03916 5 89229762 89231949 Pumo7g00644 7 10576251 10576928 PCT