Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03913 ATGGATGCGGAAACTCGACGGAAAGTCGAGGAGATGGTGTTGGATATACTGAAGAAATCCAACATTGAAGAAGCCACTGAGTTCACCATTCGAGTCGCTGCCTCGGAGCGTCTCGGCATCGACCTCTCCGACACTGCGAGTAGACAGTTCGTCAGAAACGTCGTTGAGTCTTATCTTATCTCCGTTTTGGCCAATGAAAAGGAAAAGGCCAAGGACGCAGAGAAGAAGAACGAAGATATTGCCGCCAAAAACGACGACGTAGCGAAGAAGGAAGATGTCCTTGCGGCCAACGAAGAGTCCAGAGAGACAGAGGTGCTCAAACTGAAGAGGGAAGATCCCGAACGCGTCATTTGTCAACTGTCGAACAGGAGGAACGTGGCGGTGAAAGCTTTCAAAGGAACAACCCTGGTCTCAATTAGAGAGTTCTATATGAAAGATGGAAAACTACTTCCTGGTTTTAAAGGGATAAGTTTATCTTCTGAACAATGGTCGACCTTCAAGACTAGTGTTCCTGCCATAGAGGAAGCTATCAAAAAGATGGAAGGAAGGATAAGATCAGAGCCTAATGGTAAGCAAAATGGAGATGCGTCAAATTCAGTTGTTGATGTTGCTCCTCCTGAGCCTAATGGTAAGCAAAATGGAGATGCGTCAAATTCAGTTGTTGATGTTACTCCTCCTGAGCCTAATGGTAAGCAAAATGGAGATGCATCAAATTCAGTTGTTGATGTTGCTCCTCCTGAGCCTGTCATCCCTATTGAGGTCATCCGTTTTGATGGGAAGAATTTCCAATTCTGGGCTCAGCAGATGGAATTACTCTTGAAACAATTAAAGATTGAATATGTGCTTAATGAACCATGCCCGAACCCTACACTAGGGGAAGGTGCAAAGGCTGAAGACATTGCCGCAGCCAAGGCTGCAGAAAGGAGATGGCTGAATGATGATTTAACGTGTCATCGCAATATCTTGAGCCATTTATCTGATCCTTTGTTCAACCTGTATGCAAACAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAACTGGTTTATCTGTACGAGGAATTTGGAACCAAGAGAGCTCAAGTGAAAAAGTATATTGAATTTCAGATGGTTGATGAGAAAGCAGTTATTGAGCAAATCCGAGAATTAAATGGCATTGCAGATTCTATTATTGGTGCTGGAATCTTCATTGATGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCCTCCTGGAAGGACTTCTGCACCAAGTTAATGCGTGAGGAATATCTACCTTTCCGGAAGTTAATGGAACGTATAGAGATAGAGGAAGAATATCGCTATGGAGTAAAACGAGTGGGTGAACATTCTAACAGTATGGGATATCACCAGGCCAATAAAGGTGGTGGACATAGGAAAGCTGACTATAAGCCATTGGGAATGTGTAGGAATAGGTCAGAAATTAATGCCAGGAGCGTACTCTCGTGTAGTATATGTGGGAAGAAGGGACATCTTTCTAAACATTGCTGGAGAAGAAATGACAAACAAACTAATGAGAGGAAATCAGAAGAGGATGTGCGTATACCTACAGAAGCTGATACTCTGGGTGCTACCCAGTAG 1611 0.4327 MDAETRRKVEEMVLDILKKSNIEEATEFTIRVAASERLGIDLSDTASRQFVRNVVESYLISVLANEKEKAKDAEKKNEDIAAKNDDVAKKEDVLAANEESRETEVLKLKREDPERVICQLSNRRNVAVKAFKGTTLVSIREFYMKDGKLLPGFKGISLSSEQWSTFKTSVPAIEEAIKKMEGRIRSEPNGKQNGDASNSVVDVAPPEPNGKQNGDASNSVVDVTPPEPNGKQNGDASNSVVDVAPPEPVIPIEVIRFDGKNFQFWAQQMELLLKQLKIEYVLNEPCPNPTLGEGAKAEDIAAAKAAERRWLNDDLTCHRNILSHLSDPLFNLYANRKMSAKELWEELKLVYLYEEFGTKRAQVKKYIEFQMVDEKAVIEQIRELNGIADSIIGAGIFIDDNFHVSVIISKLPPSWKDFCTKLMREEYLPFRKLMERIEIEEEYRYGVKRVGEHSNSMGYHQANKGGGHRKADYKPLGMCRNRSEINARSVLSCSICGKKGHLSKHCWRRNDKQTNERKSEEDVRIPTEADTLGATQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03913 536 MobiDBLite consensus disorder prediction 183 242 - -
Pumo5g03913 536 Coils Coil 63 90 - -
Pumo5g03913 536 ProSiteProfiles Zinc finger CCHC-type profile. 493 506 IPR001878 GO:0003676|GO:0008270
Pumo5g03913 536 Pfam gag-polypeptide of LTR copia-type 310 442 - -
Pumo5g03913 536 SUPERFAMILY ssDNA-binding transcriptional regulator domain 117 179 IPR009044 GO:0003677|GO:0006355
Pumo5g03913 536 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 183 IPR045125 GO:0003713|GO:0060261
Pumo5g03913 536 Gene3D Transcriptional Coactivator Pc4; Chain A 108 185 IPR009044 GO:0003677|GO:0006355
Pumo5g03913 536 Pfam Transcriptional Coactivator p15 (PC4) 118 168 IPR003173 GO:0003677|GO:0006355
Pumo5g03913 536 MobiDBLite consensus disorder prediction 510 536 - -
Pumo5g03913 536 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 3 60 IPR014876 -
Pumo5g03913 536 Pfam DEK C terminal domain 5 59 IPR014876 -
Pumo5g03913 536 MobiDBLite consensus disorder prediction 211 239 - -
Pumo5g03913 536 Gene3D - 491 531 - -
Pumo5g03913 536 MobiDBLite consensus disorder prediction 510 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03913 Pumo-Chr5 89182592 89186970 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Pumo5g03913 Retrotran_gag_2 8e-15 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03913 - - gmx:100818901 852.047