Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03909 ATGAGTGAGAGAATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCACCAGTTTTCTTCAATCTCCAAGCTGCATAACAATGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAATGGGCACACACTTTGTTCAACTTGCAAGACAAGAGTACACAACCGATGTCCAACTTGCAGGCAGGAACTCGGTGATATAAGGTGTCTGGCATTAGAGAAGATAGCAGAGTCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCATATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGATCAGACTGCTCAGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTCAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCAACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCCGTTTACATGGCGTTCCTGCGATTCATGGGTGACGAAAGAGATGCCCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATAAGAGACAGCCATAAGAAAGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAGGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAG 948 0.4684 MSERMESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03909 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 105 IPR013083 -
Pumo5g03909 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 162 294 - -
Pumo5g03909 315 SUPERFAMILY TRAF domain-like 106 298 - -
Pumo5g03909 315 MobiDBLite consensus disorder prediction 1 20 - -
Pumo5g03909 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 26 300 - -
Pumo5g03909 315 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Pumo5g03909 315 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Pumo5g03909 315 FunFam E3 ubiquitin-protein ligase SINAT3 103 161 - -
Pumo5g03909 315 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Pumo5g03909 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 167 294 IPR008974 GO:0005515
Pumo5g03909 315 MobiDBLite consensus disorder prediction 1 38 - -
Pumo5g03909 315 CDD Sina 167 295 - -
Pumo5g03909 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 161 IPR013083 -
Pumo5g03909 315 CDD RING-HC_SIAHs 51 89 - -
Pumo5g03909 315 SUPERFAMILY RING/U-box 40 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03909 Pumo-Chr5 89154694 89160085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03909 1 301 C3H Transcription Factor Family AT2G41980 71.192 1.01e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03909 K04506 - gmx:100782764 650.588