Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo5g03909 | ATGAGTGAGAGAATGGAATCGAGTAGCATTGAGAGCAGCACTGTGTCATCGATGACTATGATGGAAGAGGATGAGCATCCCCATCACCAGTTTTCTTCAATCTCCAAGCTGCATAACAATGGCCCCACCACTACCAGTGTCCATGACCTTCTTGAATGCCCCGTCTGCACCAACTCTATGTACCCTCCTATCCATCAGTGCCACAATGGGCACACACTTTGTTCAACTTGCAAGACAAGAGTACACAACCGATGTCCAACTTGCAGGCAGGAACTCGGTGATATAAGGTGTCTGGCATTAGAGAAGATAGCAGAGTCACTTGAACTGCCTTGCAGATACATCTCTCTTGGGTGTCCAGAGATATTTCCATATTACAGCAAACTCAAACATGAGGCTATTTGTAACTTCAGACCATACAACTGCCCTTATGCCGGATCAGACTGCTCAGTGGTTGGGGATATTCCATGCCTTGTCGCTCATTTAAGGGATGACCACAGGGTTGATATGCATTCTGGATGCACTTTCAACCATCGCTATGTCAAGTCTAATCCCATGGAAGTAGAAAATGCAACATGGATGCTAACGGTTTTCCACTGTTTTGGTCAGTATTTTTGCCTCCATTTTGAGGCCTTCCAGCTTGGCATGGCTCCCGTTTACATGGCGTTCCTGCGATTCATGGGTGACGAAAGAGATGCCCGGAACTACAGCTACAGCTTGGAGGTGGGAGGAAATGGACGTAAACTAACTTTTGAGGGGAGTCCAAGAAGCATAAGAGACAGCCATAAGAAAGTCAGAGACAGTCATGATGGTCTCATCATTTACCGCAACATGGCGCTTTTCTTCTCAGGTGGAGACAGGAAAGAGTTGAAGCTACGAGTAACAGGAAGGATATGGAAGGAACAGCAAAACCCTGAAGGTGGAGTGTGCATACCCAACCTGTGTAGCTAG | 948 | 0.4684 | MSERMESSSIESSTVSSMTMMEEDEHPHHQFSSISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPYNCPYAGSDCSVVGDIPCLVAHLRDDHRVDMHSGCTFNHRYVKSNPMEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDERDARNYSYSLEVGGNGRKLTFEGSPRSIRDSHKKVRDSHDGLIIYRNMALFFSGGDRKELKLRVTGRIWKEQQNPEGGVCIPNLCS | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo5g03909 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 105 | IPR013083 | - | |
Pumo5g03909 | 315 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 162 | 294 | - | - | |
Pumo5g03909 | 315 | SUPERFAMILY | TRAF domain-like | 106 | 298 | - | - | |
Pumo5g03909 | 315 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Pumo5g03909 | 315 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 26 | 300 | - | - | |
Pumo5g03909 | 315 | ProSiteProfiles | Zinc finger RING-type profile. | 53 | 89 | IPR001841 | - | |
Pumo5g03909 | 315 | Pfam | Seven in absentia protein family | 95 | 294 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Pumo5g03909 | 315 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 103 | 161 | - | - | |
Pumo5g03909 | 315 | ProSiteProfiles | Zinc finger SIAH-type profile. | 106 | 166 | IPR013010 | GO:0008270 | |
Pumo5g03909 | 315 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 294 | IPR008974 | GO:0005515 | |
Pumo5g03909 | 315 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Pumo5g03909 | 315 | CDD | Sina | 167 | 295 | - | - | |
Pumo5g03909 | 315 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 106 | 161 | IPR013083 | - | |
Pumo5g03909 | 315 | CDD | RING-HC_SIAHs | 51 | 89 | - | - | |
Pumo5g03909 | 315 | SUPERFAMILY | RING/U-box | 40 | 92 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo5g03909 | Pumo-Chr5 | 89154694 | 89160085 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo5g03909 | 1 | 301 | C3H Transcription Factor Family | AT2G41980 | 71.192 | 1.01e-161 | 451 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo5g03909 | K04506 | - | gmx:100782764 | 650.588 |