Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03902 ATGGACATCTTGAAGGTCCTCTTCCACTTGTTCATATTTTTTCCTGTCACATATGCCTCAGACTCATATGATTGCCAATATTACTCTTGGTGCAGCGACAACAACGTCCTTATTCGTTTCCCCTTTCAAATAGAAGGCCAGCAACATCCTTATTGTGGCTATCCTGGTTTCAAATTAACTTGTACAATTGATAGCAAAACAGTTATTAAACTTCCATACACGGAAAAGTTCTATGTCCGCAACATTAACTACCTCAGACAACAGATACAAGTCTATGACCCTGATAATTGCCTTCCAAAACGTCTTCTAAGCCTCAACCTTTCAGGTTCTCCCTTTATTGCCACTTCACTCCGCAACTACACCTTCCTAAGGTGCCCAACTCGGAACGCAGGGTCACAGTTCATTCCCATTGACTGTCTTAGCAATTCTACATCTTTCGTGTCAGCTATTCCTTCAGTGAACTTGACCAATCCATTGCCCGAGTCTTGCCATGTTATAAAGAAGCTCTCATTTCCAGTTGCAAGGCCGGGACGATATCAGGAAATTTTCAGAGATGACCTTAGTGGAGATCTTCGATTAGCATGGTATGCACCTGACTGTAGATATTGCGAATCACAAGAGGCCATGTGCGGATTTGAGAGCATAAACAGTGATCAAGTTCGTTGTTTCTTTGATTACCAAACAGCTCCTCCACAACACGGTCTTCGAGTTTTTGGAATCATCACATTAACCATTGTTGGACCAGCTATCATCGGTGCCGTTGCGATGGCATGCTATGCGTCCTTCAGGTACAGTAGAGGCAATACAGCCAGAATTGCTGCTGCACAGAGGTCGTCACCAACTGCAATATCACCCCAACCCTCCATTGCTACGATGGGCTTGGATGAGTCTACCATCGAGTCTTATCAGAAACTGGTACTAGGGGAAAGTCGACGAGTGCCTGGACCCAATGACGTATGTTGCACCATATGCTTGTCAGAGTATAAAACCAAAGACACAATCAGATGCATTCCTGAATGTTCACATTGCTTCCATGCAGAGTGCATAGATGAATGGCTTCGCATGAACAGTACATGCCCCCTTTGCCGCAACTCTCCCTCCCCTCCTTCTACTGTTCAAGTTACGTCCAGTGACCCTTGA 1140 0.4482 MDILKVLFHLFIFFPVTYASDSYDCQYYSWCSDNNVLIRFPFQIEGQQHPYCGYPGFKLTCTIDSKTVIKLPYTEKFYVRNINYLRQQIQVYDPDNCLPKRLLSLNLSGSPFIATSLRNYTFLRCPTRNAGSQFIPIDCLSNSTSFVSAIPSVNLTNPLPESCHVIKKLSFPVARPGRYQEIFRDDLSGDLRLAWYAPDCRYCESQEAMCGFESINSDQVRCFFDYQTAPPQHGLRVFGIITLTIVGPAIIGAVAMACYASFRYSRGNTARIAAAQRSSPTAISPQPSIATMGLDESTIESYQKLVLGESRRVPGPNDVCCTICLSEYKTKDTIRCIPECSHCFHAECIDEWLRMNSTCPLCRNSPSPPSTVQVTSSDP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03902 379 Pfam Ring finger domain 321 363 IPR001841 -
Pumo5g03902 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 367 IPR046948 -
Pumo5g03902 379 Pfam Wall-associated receptor kinase galacturonan-binding 25 93 IPR025287 GO:0030247
Pumo5g03902 379 SUPERFAMILY RING/U-box 313 368 - -
Pumo5g03902 379 CDD RING-H2_EL5-like 320 363 - -
Pumo5g03902 379 Pfam Wall-associated receptor kinase C-terminal 161 224 IPR032872 -
Pumo5g03902 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 368 IPR013083 -
Pumo5g03902 379 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Pumo5g03902 379 SMART ring_2 321 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03902 Pumo-Chr5 89103147 89105075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03902 19 368 C3H Transcription Factor Family AT2G25410 45.352 2.62e-96 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03902 - - gmx:100799895 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03902 5 89103147 89105075 Pumo7g00656 7 10729202 10732409 PCT