Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03901 ATGGAGCAGAAGAGGAGCAGCAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTCCTATTCCCCTCTCCGATCCTCTTCGCCAGTTCCATCAAGGATCGCCTCTTCCAACTCACCGGAATCCCCACCCAGCACCAGCGCCTCGTCACCGGCTGCCGCCACCTCAACGACGACAAATCGGCCATCCAATGCTCCCCGGAGGACGGCAACATGTTCCCCTCGGTGCGCCTCCTGCTGCGCCTCAAGGGCGGCAAGGGAGGCTTCGGGTCTCTGCTCCGCGGCGCCGCCACCAAGGCCGGCCAGAAGAAGACCAACAATTTCGACGCGTGCCGCGACATGAGTGGCCGCAGGCTGAGGCACGTCAACGCCGAGAAGAGGCTGGAGGAGTGGAAGGCCGGAGAAGAGGAGAGGAAGCTCGAGAAGGTGGCCGAGGAGTTTCTCAAGAAACAGATGAAGAAGGGAAAGGGTAAGGGTAAGAGTGAAGGTGATGGTGAAGCCCACAAATATGTCGCAAAATATAGGGAGGAATCTGAACGTTGTGTTGCCGAGGTTGCCTTGTCTGTTAAGGAGGCTCTCACTGCCAAGCGCAAGAGCCCCTCACAACCCCACCATGATGCCAAGAAGTTGAAGATATGGATGGGAAAGAGGAAATTAAATGAAAGTGATAGTGATTACAGTGATGATTCTGATGAAGAGGGGGAGATGGAGAAATCCGATTTGTTGAATGGGCCAAATGAGTCGGGATCAAATAAGGCTGAGGGTAGTTTGGGTTCGGTAAATGGGGGCGGAGGCTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGTTGTAGAAGGAAATGTGGGATCTGCTGGGATGCTGAGTGGTGAAAGTATTCAGGCCGAGGCCGATCCTGTGATAAGTGATGAGGCTGCTGCAATGCCAAAGGAGTCGGTTGTTGCTGGACTTAATGCTGAAGATAATGGATATCAGGATTGCCATGGTGGTGTATCTGATAAGTTGGAGGGTGCTGTGAATCAAGCCTCAAATGTTATGGGATCTGAAACTCTGGCCAGTGCTGGCAAATCTAACGATATGGAAATTGATAGATCTCTTGAGCATAAAGCAGCAGTCAATGAAGAAAGCTCACCAATAACTAGTGTTCCCCCGTTGGAGGAGCCCCTGAATTTTGATGCCTTTAATTCAGCTGCTGAACTTGAGATTCTTGGCTTGGAAAGGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGTACTTTGCAGGAGCGTGCTGCCAGGCTTTTTCTTTTAAAATCGACTCCACTGGATAAACTTCCAAAGAAGCTGCTTGCAAAGAAGTGA 1380 0.5138 MEQKRSSKMYNLFVKHLDGKTLTLLFPSPILFASSIKDRLFQLTGIPTQHQRLVTGCRHLNDDKSAIQCSPEDGNMFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERKLEKVAEEFLKKQMKKGKGKGKSEGDGEAHKYVAKYREESERCVAEVALSVKEALTAKRKSPSQPHHDAKKLKIWMGKRKLNESDSDYSDDSDEEGEMEKSDLLNGPNESGSNKAEGSLGSVNGGGGSSGAGSCESGSEEEKETVVEGNVGSAGMLSGESIQAEADPVISDEAAAMPKESVVAGLNAEDNGYQDCHGGVSDKLEGAVNQASNVMGSETLASAGKSNDMEIDRSLEHKAAVNEESSPITSVPPLEEPLNFDAFNSAAELEILGLERLKSELQSRGLKCGGTLQERAARLFLLKSTPLDKLPKKLLAKK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03901 459 Pfam Replication stress response SDE2 C-terminal 391 458 IPR025086 -
Pumo5g03901 459 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Pumo5g03901 459 Gene3D - 2 91 - -
Pumo5g03901 459 MobiDBLite consensus disorder prediction 201 228 - -
Pumo5g03901 459 PANTHER SPLICING FACTOR SF3A-RELATED 11 458 - -
Pumo5g03901 459 Coils Coil 405 425 - -
Pumo5g03901 459 FunFam Replication stress response regulator SDE2 2 93 - -
Pumo5g03901 459 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 155 IPR024974 -
Pumo5g03901 459 MobiDBLite consensus disorder prediction 198 316 - -
Pumo5g03901 459 MobiDBLite consensus disorder prediction 247 277 - -
Pumo5g03901 459 SUPERFAMILY Ubiquitin-like 6 89 IPR029071 -
Pumo5g03901 459 CDD Ubl_ubiquitin_like 12 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03901 Pumo-Chr5 89099422 89102950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03901 392 458 C2H2 Transcription Factor Family AT5G06160 46.269 3.13e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03901 K25059 - gmx:100781694 673.315